Répertoire du corps professoral
François Belzile
Professeur titulaire
(418) 656-2131, poste 405763
Francois.Belzile@fsaa.ulaval.ca
Pavillon Charles-Eugène-Marchand
1030, avenue de la Médecine
Local 1141
Centre Sève : Centre de recherche en sciences du végétal (SEVE)
Programme: Regroupements stratégiques NT
Organisme(s) subventionnaire(s): Fonds de recherche du Québec - Nature et technologies, Université de Sherbrooke, Université Laval - Fonds internes, Université McGill
Établissement tête: Université de Sherbrooke
Du 1 avril 2017
au 31 mars 2024
CropSNPs: an ultra-low cost genotyping approach in barley and soybean
Programme: Programme Agri-innovation (Grappe agroscientifique)
Organisme(s) subventionnaire(s): Alliance de Recherche sur les Cultures Commerciales du Canada
Établissement tête: Université Laval
Du 1 avril 2018
au 31 décembre 2023
Initiation d’un programme d'amélioration génétique de l'orge brassicole à deux rangs pour le Québec
Programme: Programme Innov’Action agroalimentaire
Organisme(s) subventionnaire(s): Ministère de l'agriculture, des pêcheries et de l'alimentation, Semican inc., Producteurs de grain du Québec, Céréla inc.
Établissement tête: Université Laval
Du 10 mars 2020
au 31 mai 2024
Amélioration génétique de l'orge brassicole à deux rangs pour le Québec
Organisme(s) subventionnaire(s): Consortium de recherche et innovations en bioprocédés industriels au Québec
Établissement tête: Université Laval
Du 1 avril 2020
au 31 mai 2024
Development and validation of a genomic-based dianostic tool of the virulence profile of Phytophthora sojae, a major pathogen of soybean
Programme: Programme de partenariats pour les applications de la génomique (PPAG)
Organisme(s) subventionnaire(s): Alliance de Recherche sur les Cultures Commerciales du Canada, Génome Québec, Ministère de l'agriculture, des pêcheries et de l'alimentation, Ayos Diagnostic, Génome Canada
Établissement tête: Université Laval
Du 1 janvier 2020
au 31 décembre 2023
Activité 1: Plateforme de génotypage
Programme: Programme de partenariats pour les applications de la génomique (PPAG)
Organisme(s) subventionnaire(s): Génome Québec, Génome Canada, Barley Council of Canada, Semences Prograin Inc.
Établissement tête: Université Laval
Du 1 avril 2021
au 31 mars 2024
Activité 2: Prédiction génomique
Programme: Programme de partenariats pour les applications de la génomique (PPAG)
Organisme(s) subventionnaire(s): Génome Canada, Sollio Agriculture, Génome Québec, Semences Prograin Inc.
Établissement tête: Université Laval
Du 1 avril 2021
au 31 mars 2024
Activité 4 : Gestion de projet et coordination
Programme: Programme de partenariats pour les applications de la génomique (PPAG)
Organisme(s) subventionnaire(s): Génome Québec, Génome Canada
Établissement tête: Université Laval
Du 1 avril 2021
au 31 mars 2024
Activité 3 : Sélection assistée par la génomique
Programme: Programme de partenariats pour les applications de la génomique (PPAG)
Organisme(s) subventionnaire(s): Génome Québec
Établissement tête: Université Laval
Du 1 avril 2021
au 31 mars 2024
Transferts institutions
Programme: Programme de partenariats pour les applications de la génomique (PPAG)
Organisme(s) subventionnaire(s): Génome Canada
Établissement tête: Université Laval
Du 1 avril 2021
au 31 mars 2024
Caractérisation de l'assise génétique de l'architecture du système racinaire chez le soja et son rôle dans la résistance aux changements climatiques
Programme: Projet de recherche en équipe
Organisme(s) subventionnaire(s): Fonds de recherche du Québec - Nature et technologies
Établissement tête: Université Laval
Du 1 avril 2021
au 31 mars 2024
Development and implementation of a toolkit for genomics-assisted breeding in soybean
Programme: Programme de partenariats pour les applications de la génomique (PPAG)
Organisme(s) subventionnaire(s): Grain Farmers of Ontario, Génome Canada, Génome Québec, Semences Prograin Inc., Sollio Agriculture, Alliance de Recherche sur les Cultures Commerciales du Canada, Barley Council of Canada
Établissement tête: Université Laval
Du 1 avril 2021
au 31 mars 2024
The protection of wheat across the Americas against the challenges of climate change
Programme: Accélération-Élévation
Organisme(s) subventionnaire(s): MITACS Inc.
Établissement tête: Université Laval
Du 1 juin 2021
au 31 juillet 2024
Exploiter l'architecture et l'anatomie des racines pour améliorer la santé du sol et l'acquisition des ressources dans un climat changeant
Programme: Programme de recherche en partenariat – Agriculture durable
Organisme(s) subventionnaire(s): Fonds de recherche du Québec - Nature et technologies
Établissement tête: Université Laval
Du 1 avril 2023
au 31 mars 2026
Subventions des 5 dernières années
Changing fates: rewiring gene expression in barley androgenesis
Programme: Subventions à la découverte SD (individuelles et d'équipe)
Organisme(s) subventionnaire(s): Conseil de recherches en sciences naturelles et génie Canada
Établissement tête: Université Laval
Du 1 avril 2017
au 31 mars 2023
Breeding barley for high yield and resistance to Fusarium head blight for Eastern Canada
Organisme(s) subventionnaire(s): Barley Council of Canada
Établissement tête: Université Laval
Du 1 avril 2019
au 31 mars 2023
Genome-wide association study (GWAS) for biological nitrogen fixation and protein content in soybean (Glycine max)
Programme: Bourse de recherche Mitacs Globalink
Organisme(s) subventionnaire(s): MITACS Inc.
Établissement tête: Université Laval
Du 12 décembre 2021
au 22 juillet 2022
Encadrements terminés dans les 5 dernières années
Publications des 5 dernières années
Improvement of key agronomical traits in soybean through genomic prediction of superior crosses Crop science., 2022/11. Jean M, Cober E, O'Donoughue L, Rajcan I, Belzile F. DOI 10.1002/csc2.20583
Characterizing resistance to soybean cyst nematode in PI 494182, an early maturing soybean accession Crop science., 2022/07. St‐Amour VTB, Mimee B, Torkamaneh D, Jean M, Belzile F, O'Donoughue LS. DOI 10.1002/csc2.20162
The SoyaGen Project: Putting Genomics to Work for Soybean Breeders. Frontiers in plant science, 2022/04. Belzile F, Jean M, Torkamaneh D, Tardivel A, Lemay MA, Boudhrioua C, Arsenault-Labrecque G, Dussault-Benoit C, Lebreton A, de Ronne M, Tremblay V, Bélanger R. DOI 10.3389/fpls.2022.887553
The construction of a high-density consensus genetic map for soybean based on SNP markers derived from genotyping-by-sequencing. Genome, 2022/06. Fallah M, Jean M, Boucher St-Amour VT, O'Donoughue L, Belzile F. DOI 10.1139/gen-2021-0054
CRISPR/Cas9 in Planta Hairy Root Transformation: A Powerful Platform for Functional Analysis of Root Traits in Soybean. Plants (Basel, Switzerland), 2022/04. Niazian M, Belzile F, Torkamaneh D. DOI 10.3390/plants11081044
Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology. BMC biology, 2022/02. Lemay MA, Sibbesen JA, Torkamaneh D, Hamel J, Levesque RC, Belzile F. DOI 10.1186/s12915-022-01255-w
Genome-Wide Association Study Statistical Models: A Review. Methods in molecular biology (Clifton, N.J.), 2022/01. Yoosefzadeh-Najafabadi M, Eskandari M, Belzile F, Torkamaneh D. DOI 10.1007/978-1-0716-2237-7_4
RXLR effector gene Avr3a from Phytophthora sojae is recognized by Rps8 in soybean. Molecular plant pathology, 2022/02. Arsenault-Labrecque G, Santhanam P, Asselin Y, Cinget B, Lebreton A, Labbé C, Belzile F, Gijzen M, Bélanger RR. DOI 10.1111/mpp.13190
Designing a Genome-Wide Association Study: Main Steps and Critical Decisions. Methods in molecular biology (Clifton, N.J.), 2022/01. Belzile F, Torkamaneh D. DOI 10.1007/978-1-0716-2237-7_1
A high-resolution consensus linkage map for barley based on GBS-derived genotypes. Genome, 2021/12. Abed A, Badea A, Beattie A, Khanal R, Tucker J, Belzile F. DOI 10.1139/gen-2021-0055
Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology 2021/08. Lemay M, Sibbesen JA, Torkamaneh D, Hamel J, Levesque RC, Belzile F. DOI 10.1101/2021.08.26.457816
Mapping of partial resistance to Phytophthora sojae in soybean PIs using whole-genome sequencing reveals a major QTL. The plant genome, 2021/12. de Ronne M, Santhanam P, Cinget B, Labbé C, Lebreton A, Ye H, Vuong TD, Hu H, Valliyodan B, Edwards D, Nguyen HT, Belzile F, Bélanger R. DOI 10.1002/tpg2.20184
GWAS identifies an ortholog of the rice D11 gene as a candidate gene for grain size in an international collection of hexaploid wheat. Scientific reports, 2021/09. Tekeu H, Ngonkeu ELM, Bélanger S, Djocgoué PF, Abed A, Torkamaneh D, Boyle B, Tsimi PM, Tadesse W, Jean M, Belzile F. DOI 10.1038/s41598-021-98626-0
Identification of genomic loci conferring broad-spectrum resistance to multiple nematode species in exotic soybean accession PI 567305. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2021/07. Vuong TD, Sonah H, Patil G, Meinhardt C, Usovsky M, Kim KS, Belzile F, Li Z, Robbins R, Shannon JG, Nguyen HT. DOI 10.1007/s00122-021-03903-1
GWAS identifies a wheat orthologue of the rice D11 gene as an important contributor to grain size in an international collection of hexaploid wheat 2021/03. Tekeu H, Ngonkeu EL, Bélanger S, Djocgoué PF, Abed A, Torkamaneh D, Boyle B, Tsimi P, Tadesse W, Jean M, Belzile F. DOI 10.21203/rs.3.rs-244194/v1
The pan-genome of the cultivated soybean (PanSoy) reveals an extraordinarily conserved gene content. Plant biotechnology journal, 2021/06. Torkamaneh D, Lemay MA, Belzile F. DOI 10.1111/pbi.13600
Genome Assembly of the Canadian two-row Malting Barley cultivar AAC Synergy. G3 (Bethesda, Md.), 2021/04. Xu W, Tucker JR, Bekele WA, You FM, Fu YB, Khanal R, Yao Z, Singh J, Boyle B, Beattie AD, Belzile F, Mascher M, Tinker NA, Badea A. DOI 10.1093/g3journal/jkab031
A bumper crop of SNPs in soybean through high-density genotyping-by-sequencing (HD-GBS). Plant biotechnology journal, 2021/02. Torkamaneh D, Laroche J, Boyle B, Hyten DL, Belzile F. DOI 10.1111/pbi.13551
Comprehensive Genome-Wide Association Analysis Reveals the Genetic Basis of Root System Architecture in Soybean. Frontiers in plant science, 2020/12. Seck W, Torkamaneh D, Belzile F. DOI 10.3389/fpls.2020.590740
Accurate Imputation of Untyped Variants from Deep Sequencing Data. Methods in molecular biology (Clifton, N.J.), 2021/01. Torkamaneh D, Belzile F. DOI 10.1007/978-1-0716-1103-6_13
Genome-wide association study for resistance to the Meloidogyne javanica causing root-knot nematode in soybean. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2021/01. Alekcevetch JC, de Lima Passianotto AL, Ferreira EGC, Dos Santos AB, da Silva DCG, Dias WP, Belzile F, Abdelnoor RV, Marcelino-Guimarães FC. DOI 10.1007/s00122-020-03723-9
Genome-wide association identifies several QTLs controlling cysteine and methionine content in soybean seed including some promising candidate genes. Scientific reports, 2020/12. Malle S, Eskandari M, Morrison M, Belzile F. DOI 10.1038/s41598-020-78907-w
Identification of loci controlling mineral element concentration in soybean seeds. BMC plant biology, 2020/09. Malle S, Morrison M, Belzile F. DOI 10.1186/s12870-020-02631-w
Population structure of Nepali spring wheat (Triticum aestivum L.) germplasm. BMC plant biology, 2020/11. Khadka K, Torkamaneh D, Kaviani M, Belzile F, Raizada MN, Navabi A. DOI 10.1186/s12870-020-02722-8
Fast-GBS v2.0: an analysis toolkit for genotyping-by-sequencing data. Genome, 2020/10. Torkamaneh D, Laroche J, Belzile F. DOI 10.1139/gen-2020-0077
Soybean (Glycine max) Haplotype Map (GmHapMap): a universal resource for soybean translational and functional genomics. Plant biotechnology journal, 2020/09. Torkamaneh D, Laroche J, Valliyodan B, O'Donoughue L, Cober E, Rajcan I, Vilela Abdelnoor R, Sreedasyam A, Schmutz J, Nguyen HT, Belzile F. DOI 10.1111/pbi.13466
Genome-wide association mapping of Sclerotinia sclerotiorum resistance in soybean using whole-genome resequencing data. BMC plant biology, 2020/05. Boudhrioua C, Bastien M, Torkamaneh D, Belzile F. DOI 10.1186/s12870-020-02401-8
Identification of Loci Controlling Mineral Element Concentration in Soybean Seeds 2020/08. MALLE S, Morrison M, Belzile F. DOI 10.21203/rs.3.rs-22007/v2
The commitment of barley microspores into embryogenesis involves miRNA-directed regulation of members of the SPL, GRF and HD-ZIPIII transcription factor families 2020/06. Bélanger S, Baldrich P, Lemay M, Marchand S, Esteves P, Meyers BC, Belzile F. DOI 10.1101/2020.06.11.146647
Genome-wide association mapping of Sclerotinia sclerotiorum resistance in soybean using whole-genome resequencing data 2020/04. Boudhrioua C, Bastien M, Torkamaneh D, Belzile F. DOI 10.21203/rs.2.14709/v5
DepthFinder: a tool to determine the optimal read depth for reduced-representation sequencing. Bioinformatics (Oxford, England), 2020/01. Torkamaneh D, Laroche J, Boyle B, Belzile F. DOI 10.1093/bioinformatics/btz473
Haplotype diversity underlying quantitative traits in Canadian soybean breeding germplasm. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2020/03. Bruce RW, Torkamaneh D, Grainger CM, Belzile F, Eskandari M, Rajcan I. DOI 10.1007/s00122-020-03569-1
NanoGBS: A Miniaturized Procedure for GBS Library Preparation. Frontiers in genetics, 2020/02. Torkamaneh D, Boyle B, St-Cyr J, Légaré G, Pomerleau S, Belzile F. DOI 10.3389/fgene.2020.00067
Discriminant haplotypes of avirulence genes of Phytophthora sojae lead to a molecular assay to predict phenotypes. Molecular plant pathology, 2020/01. Dussault-Benoit C, Arsenault-Labrecque G, Sonah H, Belzile F, Bélanger RR. DOI 10.1111/mpp.12898
Genome-wide association analyses reveal the genetic basis of biomass accumulation under symbiotic nitrogen fixation in African soybean. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2019/12. Torkamaneh D, Chalifour FP, Beauchamp CJ, Agrama H, Boahen S, Maaroufi H, Rajcan I, Belzile F. DOI 10.1007/s00122-019-03499-7
Genetic Analysis of High Protein Content in 'AC Proteus' Related Soybean Populations Using SSR, SNP, DArT and DArTseq Markers. Scientific reports, 2019/12. Samanfar B, Cober ER, Charette M, Tan LH, Bekele WA, Morrison MJ, Kilian A, Belzile F, Molnar SJ. DOI 10.1038/s41598-019-55862-9
Genome-Wide Association Study for Resistance to the <em>Meloidogyne javanica</em> Causing Root-Knot Nematode in Soybean 2019/12. Alekcevetch JC, Passianotto ALdL, Ferreira EGC, dos Santos AB, da Silva DCG, Dias WP, Belzile F, Abdelnoor RV, Marcelino-Guimarães FC. DOI 10.20944/preprints201912.0093.v1
Integrated QTL mapping, gene expression and nucleotide variation analyses to investigate complex quantitative traits: a case study with the soybean-Phytophthora sojae interaction. Plant biotechnology journal, 2019/12. de Ronne M, Labbé C, Lebreton A, Sonah H, Deshmukh R, Jean M, Belzile F, O'Donoughue L, Bélanger R. DOI 10.1111/pbi.13301
Comparing Single-SNP, Multi-SNP, and Haplotype-Based Approaches in Association Studies for Major Traits in Barley. The plant genome, 2019/11. Abed A, Belzile F. DOI 10.3835/plantgenome2019.05.0036
Time for a paradigm shift in the use of plant genetic resources. Genome, 2019/12. Belzile F, Abed A, Torkamaneh D. DOI 10.1139/gen-2019-0141
A Systematic Gene-Centric Approach to Define Haplotypes and Identify Alleles on the Basis of Dense Single Nucleotide Polymorphism Datasets. The plant genome, 2019/11. Tardivel A, Torkamaneh D, Lemay MA, Belzile F, O'Donoughue LS. DOI 10.3835/plantgenome2018.08.0061
Association mapping of a locus that confers southern stem canker resistance in soybean and SNP marker development. BMC genomics, 2019/10. Maldonado Dos Santos JV, Ferreira EGC, Passianotto ALL, Brumer BB, Santos ABD, Soares RM, Torkamaneh D, Arias CAA, Belzile F, Abdelnoor RV, Marcelino-Guimarães FC. DOI 10.1186/s12864-019-6139-6
Genome-wide genetic diversity is maintained through decades of soybean breeding in Canada. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2019/08. Bruce RW, Torkamaneh D, Grainger C, Belzile F, Eskandari M, Rajcan I. DOI 10.1007/s00122-019-03408-y
Association mapping of a locus that confers southern stem canker resistance in soybean and SNP marker development 2019/09. Santos JVMd, Ferreira EGC, Passianotto ALdL, Brumer BB, Santos ABD, Soares RM, Torkamaneh D, Arias CAA, Belzile F, Abdelnoor RV, Marcelino-Guimaraes F. DOI 10.21203/rs.2.11243/v2
SRG extractor: a skinny reference genome approach for reduced-representation sequencing. Bioinformatics (Oxford, England), 2019/09. Torkamaneh D, Laroche J, Rajcan I, Belzile F. DOI 10.1093/bioinformatics/btz043
Screening populations for copy number variation using genotyping-by-sequencing: a proof of concept using soybean fast neutron mutants. BMC genomics, 2019/08. Lemay MA, Torkamaneh D, Rigaill G, Boyle B, Stec AO, Stupar RM, Belzile F. DOI 10.1186/s12864-019-5998-1
Isolated Microspore Culture in Barley. Methods in molecular biology (Clifton, N.J.), 2019/01. Esteves P, Belzile FJ. DOI 10.1007/978-1-4939-8944-7_5
Molecular tools for detecting Pdh1 can improve soybean breeding efficiency by reducing yield losses due to pod shatter Molecular breeding., 2019/02. Miranda C, Carolyn Culp, David M. Grant, François Belzile, Kristin Bilyeu, Mária Škrabišová, Trupti Joshi. DOI 10.1007/s11032-019-0935-1
Genotyping-by-Sequencing on the Ion Torrent Platform in Barley. Methods in molecular biology (Clifton, N.J.), 2019/01. Abed A, Légaré G, Pomerleau S, St-Cyr J, Boyle B, Belzile FJ. DOI 10.1007/978-1-4939-8944-7_15
Soybean Haplotype Map (GmHapMap): A Universal Resource for Soybean Translational and Functional Genomics 2019/01. Torkamaneh D, Laroche J, Valliyodan B, O’Donoughue L, Cober E, Rajcan I, Abdelnoor RV, Sreedasyam A, Schmutz J, Nguyen HT, Belzile F. DOI 10.1101/534578
Stable predictive markers for Phytophthora sojae avirulence genes that impair infection of soybean uncovered by whole genome sequencing of 31 isolates. BMC biology, 2018/07. Arsenault-Labrecque G, Sonah H, Lebreton A, Labbé C, Marchand G, Xue A, Belzile F, Knaus BJ, Grünwald NJ, Bélanger RR. DOI 10.1186/s12915-018-0549-9
Identification of QTLs Associated with Biological Nitrogen Fixation Traits in Soybean Using a Genotyping‐by‐Sequencing Approach Crop science., 2018/11. Grunvald AK, Torres AR, Passianotto ALdL, Santos MA, Jean M, Belzile F, Hungria M. DOI 10.2135/cropsci2018.01.0031
Identification of candidate domestication-related genes with a systematic survey of loss-of-function mutations. The Plant journal : for cell and molecular biology, 2018/11. Torkamaneh D, Laroche J, Rajcan I, Belzile F. DOI 10.1111/tpj.14104
When less can be better: How can we make genomic selection more cost-effective and accurate in barley? TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2018/06. Abed A, Pérez-Rodríguez P, Crossa J, Belzile F. DOI 10.1007/s00122-018-3120-8
Exploring the potential and limitations of genotyping-by-sequencing for SNP discovery and genotyping in tetraploid potato. Genome, 2018/04. Bastien M, Boudhrioua C, Fortin G, Belzile F. DOI 10.1139/gen-2017-0236
Differential Expression Profiling of Microspores During the Early Stages of Isolated Microspore Culture Using the Responsive Barley Cultivar Gobernadora. G3 (Bethesda, Md.), 2018/05. Bélanger S, Marchand S, Jacques PÉ, Meyers B, Belzile F. DOI 10.1534/g3.118.200208
Silicon protects soybean plants against Phytophthora sojae by interfering with effector-receptor expression. BMC plant biology, 2018/05. Rasoolizadeh A, Labbé C, Sonah H, Deshmukh RK, Belzile F, Menzies JG, Bélanger RR. DOI 10.1186/s12870-018-1312-7
QTL mapping uncovers a semi-dwarf 1 (sdw1) allele in the barley (Hordeum vulgare) ND23049 line. Genome, 2018/04. Bélanger S, Paquet-Marceau S, Díaz Lago JE, Belzile F. DOI 10.1139/gen-2017-0211
Efficient genome-wide genotyping strategies and data integration in crop plants. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2018/01. Torkamaneh D, Boyle B, Belzile F. DOI 10.1007/s00122-018-3056-z
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