Répertoire du corps professoral
Ilga Mercedes Porth
Professeure agrégée
ilga.porth@sbf.ulaval.ca
Pavillon Abitibi-Price
2405, rue de la Terrasse
Local 3137
Harnessing the potential of natural loss-of-function allelic variants in wild poplar germplasm for accelerated forest tree domestication
Programme: Subventions à la découverte SD (individuelles et d'équipe)
Organisme(s) subventionnaire(s): Conseil de recherches en sciences naturelles et génie Canada, Secrétariat Inter-Conseils (Canada) (CRSH, CRSNG, IRSC)
Établissement tête: Université Laval
Du 1 avril 2017
au 31 mars 2024
Centre d'étude de la forêt
Programme: Regroupements stratégiques NT
Organisme(s) subventionnaire(s): Université Laval - Fonds internes, Fonds de recherche du Québec - Nature et technologies
Établissement tête: Université du Québec à Montréal - UQAM
Du 1 avril 2019
au 31 mars 2026
Développement de nouvelles méthodes de luttes ciblées contre la tordeuse des bourgeons de l'épinette
Organisme(s) subventionnaire(s): Ministère des Forêts, de la Faune et des Parcs
Établissement tête: Université Laval
Du 1 janvier 2020
au 31 mars 2024
Ecogenomics of mining areas for sustainable Canadian North (GENOSCAN)
Programme: Sentinelle Nord - Deuxième appel à projets majeurs
Organisme(s) subventionnaire(s): Secrétariat des programmes interorganismes à l’intention des établissements
Établissement tête: Université Laval
Du 1 novembre 2020
au 31 décembre 2025
Combattre la tordeuse des bourgeons de l'épinette avec son propre ADN: développement de nouvelles méthodes de luttes aux ravageurs forestiers innovantes et inoffensives
Programme: Projet de recherche en équipe
Organisme(s) subventionnaire(s): Fonds de recherche du Québec - Nature et technologies
Établissement tête: Université du Québec à Chicoutimi - UQAC
Du 1 avril 2021
au 31 mars 2024
Fast track diagnosis of stress, disease, phenology and growth – Drone-based high-Troughput field phenotyping for genome assisted tree breeding and selection
Programme: Programme de partenariats pour les applications de la génomique (PPAG)
Organisme(s) subventionnaire(s): Génome Québec, Génome Canada, Université de Toronto
Établissement tête: University of Toronto
Du 1 octobre 2021
au 30 septembre 2024
Phytopheno: Évaluation de la diversité phytochimique dans tout le règne végétal à l'aide de méthodes d'analyse GC-MS de pointe
Programme: Fonds des leaders John-R.-Evans (FLJR)
Organisme(s) subventionnaire(s): Fondation Canadienne pour l'innovation (La), Ministère de l'éducation et de l'enseignement supérieur
Établissement tête: Université Laval
Du 1 avril 2022
au 28 septembre 2023
Développement des outils reliés à la certification forestière basée sur la génomique et la traçabilité
Organisme(s) subventionnaire(s): Ressources naturelles Canada
Établissement tête: Université Laval
Du 6 juin 2022
au 31 mars 2024
Genomics-Informed Forest Certification and Wood Traceability Tools and Protocols
Programme: Programme d’intégration de la génomique
Organisme(s) subventionnaire(s): Génome Québec
Établissement tête: Université Laval
Du 1 juillet 2022
au 30 juin 2024
Subventions des 5 dernières années
BioSurveillance of Alien Forest Enemies (bioSAFE)
Programme: Les ressources naturelles et l'environnement: les solutions génomiques aux défis sectoriels
Organisme(s) subventionnaire(s): Génome Québec, Genome British Columbia, Génome Canada
Établissement tête: University of British Columbia
Du 1 octobre 2016
au 30 juin 2022
Étude du génome Populus tremuloides, une espèce forestière nord-américaine, à large distribution, pour détecter l'adaptation locale (climat, sol)
Programme: Programme bilatéral de recherche collaborative Québec | Mexique
Organisme(s) subventionnaire(s): Conacyt (Mexique), Fonds de recherche du Québec - Nature et technologies
Établissement tête: Université Laval
Du 1 mars 2018
au 31 mars 2022
Tree biology and plant functional genomics laboratory
Programme: Fonds des leaders John-R.-Evans (FLJR)
Organisme(s) subventionnaire(s): Ministère de l'éducation et de l'enseignement supérieur, Fondation Canadienne pour l'innovation (La)
Établissement tête: Université Laval
Du 1 avril 2019
au 30 septembre 2021
FGR - Metabolomics for the assessment of Canadian conifer species vulnerability to an invasive polyphagous insect
Programme: Fonds général de recherche du CRSNG
Organisme(s) subventionnaire(s): Université Laval - Fonds internes
Établissement tête: Université Laval
Du 20 mai 2020
au 30 septembre 2021
Traçabilité des essences forestières
Organisme(s) subventionnaire(s): Ressources naturelles Canada
Établissement tête: Université Laval
Du 3 décembre 2020
au 31 mars 2022
Encadrements terminés dans les 5 dernières années
Publications des 5 dernières années
Genomic Selection in Canadian Spruces Compendium of Plant Genomes, 2020. DOI 10.1007/978-3-030-21001-4_8
Genomic Diversity Evaluation of Populus trichocarpa Germplasm for Rare Variant Genetic Association Studies Frontiers in Genetics, 2020/01/28. DOI 10.3389/fgene.2019.01384
An Applied Empirical Framework for Invasion Science: Confronting Biological Invasion Through Collaborative Research Aimed at Tool Production Annals of the Entomological Society of America, 2020. Blackburn, Gwylim S., Bilodeau, Pierre, Cooke, Tracey, Cui, Mingming, Cusson, Michel, Hamelin, Richard C., Keena, Melody A., Picq, Sandrine, Roe, Amanda D., Shi, Juan, Wu, Yunke, Porth, Ilga. DOI 10.1093/AESA/SAZ072
An applied empirical framework for invasion science: Confronting biological invasion through collaborative research aimed at tool production American Historical Review, 2020. Blackburn, G.S., Bilodeau, P., Cooke, T., Cui, M., Cusson, M., Hamelin, R.C., Keena, M.A., Picq, S., Roe, A.D., Shi, J., Wu, Y., Porth, I.. DOI 10.1093/AHR/RHZ1097
The application gap: Genomics for biodiversity and ecosystem service management Biological Conservation, 2023/02. Myriam Heuertz, Silvia B. Carvalho, Juan Galindo, Baruch Rinkevich, Piotr Robakowski, Tsipe Aavik, Ilhan Altinok, Julia M.I. Barth, Helena Cotrim, Roos Goessen, Santiago C. González-Martínez, Tine Grebenc, Sean Hoban, Alexander Kopatz, Barry J. McMahon, Ilga Porth, Joost A.M. Raeymaekers, Sabrina Träger, Alejandro Valdecantos, Adriana Vella, Cristiano Vernesi, Pauline Garnier-Géré. DOI 10.1016/j.biocon.2022.109883
Chromosome‐scale genome assembly and insights into the metabolome and gene regulation of leaf color transition in an important oak species, <i>Quercus dentata</i> New Phytologist, 2023/02/15. Wen-Bo Wang, He Xiang‐Feng, Xue‐Mei Yan, Bo Ma, Cun‐Fu Lu, Jing Wu, Yi Zheng, Wen‐He Wang, Xue Wen‐Bo, Yousry A. El‐Kassaby, Ilga Porth, Ping‐Sheng Leng, Zeng‐Hui Hu, Jian-Feng Mao. DOI 10.1111/nph.18814
Structural genomic variations and their effects on phenotypes in Populus 2023/02/15. Ilga Porth, Roos Goessen, Berthold Heinze. DOI 10.1101/2023.02.14.528455
Gapless genome assembly of azalea and multi-omics investigation into divergence between two species with distinct flower color Horticulture Research, 2022/10/26. Shuai Nie, Shi-Wei Zhao, Tian-Le Shi, Wei Zhao, Ren-Gang Zhang, Xue-Chan Tian, Jing-Fang Guo, Xue-Mei Yan, Yu-Tao Bao, Zhi-Chao Li, Lei Kong, Hai-Yao Ma, Zhao-Yang Chen, Hui Liu, Yousry A El-Kassaby, Ilga Porth, Fu-Sheng Yang, Jian-Feng Mao. DOI 10.1093/hr/uhac241
Independent Evolution Has Led to Distinct Genomic Signatures in Dutch Elm Disease-Causing Fungi and Other Vascular Wilts-Causing Fungal Pathogens Journal of Fungi, 2022/12/20. Anna Fijarczyk, Louis Bernier, Monique L. Sakalidis, Carmen M. Medina-Mora, Ilga Porth. DOI 10.3390/jof9010002
Building resiliency in conifer forests: Interior spruce crosses among weevil resistant and susceptible parents produce hybrids appropriate for multi-trait selection PLOS ONE, 2022/12/02. Jaroslav Klápště, Barry Jaquish, Ilga Porth. DOI 10.1371/journal.pone.0263488
Potential allopolyploid origin of Ericales revealed with gene-tree reconciliation Frontiers in Plant Science, 2022/11/15. Shuai Nie, Xue-Chan Tian, Lei Kong, Shi-Wei Zhao, Zhao-Yang Chen, Si-Qian Jiao, Yousry A. El-Kassaby, Ilga Porth, Fu-Sheng Yang, Wei Zhao, Jian-Feng Mao. DOI 10.3389/fpls.2022.1006904
Genome‐scale phylogeography resolves the native population structure of the Asian longhorned beetle, <i>Anoplophora glabripennis</i> (Motschulsky) Evolutionary Applications, 2022/04/11. DOI 10.1111/eva.13381
Editorial: Genomic basis of adaptations to new environments in expansive and invasive species Frontiers in Ecology and Evolution, 2022/09/06. Aleksandra Biedrzycka, Anna Fijarczyk, Agnieszka Kloch, Ilga Mercedes Porth. DOI 10.3389/fevo.2022.974649
Coping with environmental constraints: Geographically divergent adaptive evolution and germination plasticity in the transcontinental <scp> <i>Populus tremuloides</i> </scp> PLANTS, PEOPLE, PLANET, 2022/07/19. DOI 10.1002/ppp3.10297
Lilac (Syringa oblata) genome provides insights into its evolution and molecular mechanism of petal color change Communications Biology, 2022/07/09. DOI 10.1038/s42003-022-03646-9
SubPhaser: a robust allopolyploid subgenome phasing method based on subgenome-specific k-mers New Phytologist, 2022. Jia, K.-H., Wang, Z.-X., Wang, L., Li, G.-Y., Zhang, W., Wang, X.-L., Xu, F.-J., Jiao, S.-Q., Zhou, S.-S., Liu, H., Ma, Y., Bi, G., Zhao, W., El-Kassaby, Y.A., Porth, I., Li, G., Zhang, R.-G., Mao, J.-F.. DOI 10.1111/nph.18173
Genomics-Based Systems and Multi-disciplinary Approaches to Unlock Complex Gene Networks Underlying Wood Formation Current Forestry Reports, 2022/03/26. DOI 10.1007/s40725-022-00162-1
Global urban environmental change drives adaptation in white clover. Science (New York, N.Y.), 2022/03/17. DOI 10.1126/science.abk0989
UV<i>-</i>B and UV<i>-</i>C radiation trigger both common and distinctive signal perceptions and transmissions in <i>Pinus tabuliformis</i> Carr Tree Physiology, 2022/03/02. DOI 10.1093/treephys/tpac021
Centromere-Specific Retrotransposons and Very-Long-Chain Fatty Acid Biosynthesis in the Genome of Yellowhorn (Xanthoceras sorbifolium, Sapindaceae), an Oil-Producing Tree With Significant Drought Resistance Frontiers in Plant Science, 2021/11/22. DOI 10.3389/fpls.2021.766389
A comprehensive annotation dataset of intact LTR retrotransposons of 300 plant genomes Scientific Data, 2021/12. DOI 10.1038/s41597-021-00968-x
Chromosome-scale assembly and evolution of the tetraploid Salvia splendens (Lamiaceae) genome Horticulture Research, 2021/12. DOI 10.1038/s41438-021-00614-y
Haplotype-resolved genome assembly and allele-specific gene expression in cultivated ginger Horticulture Research, 2021/12. DOI 10.1038/s41438-021-00599-8
Quercus species divergence is driven by natural selection on evolutionarily less integrated traits Heredity, 2021/02. DOI 10.1038/s41437-020-00378-6
Variation in Platycladus orientalis (Cupressaceae) Reproductive Output and Its Effect on Seed Orchard Crops’ Genetic Diversity Forests, 2021/10/20. DOI 10.3390/f12111429
Comment mettre la génomique forestière et la génomique de la conservation au service des communautés autochtones? The Forestry Chronicle, 2021/09. DOI 10.5558/tfc2021-026
How to put forest and conservation genomics into motion for and with Indigenous communities? The Forestry Chronicle, 2021/09. DOI 10.5558/tfc2021-031
Development of a Large Gene-Associated SSR Marker Set and in-Depth Genetic Characterization in Scarlet Sage Frontiers in Genetics, 2020/05/21. DOI 10.3389/fgene.2020.00504
UV-B-induced molecular mechanisms of stress physiology responses in the major northern Chinese conifer Pinus tabuliformis Carr. Tree Physiology, 2021/01/08. DOI 10.1093/treephys/tpaa180
Chromosome-level genome assembly of a parent species of widely cultivated azaleas Nature Communications, 2020/12. DOI 10.1038/s41467-020-18771-4
Linkage disequilibrium vs. pedigree: Genomic selection prediction accuracy in conifer species PLOS ONE, 2020/06/10. DOI 10.1371/journal.pone.0232201
Gene copy number variations involved in balsam poplar (Populus balsamifera L.) adaptive variations Molecular Ecology, 2019. Prunier, Julien, Giguere, Isabelle, Ryan, Natalie, Guy, Robert, Soolanayakanahally, Raju, Isabel, Nathalie, MacKay, John, Porth, Ilga. DOI 10.1111/MEC.14836
Biosurveillance of forest insects: part Iintegration and application of genomic tools to the surveillance of non-native forest insects Journal of Pest Science, 2019. Roe, Amanda D., Torson, Alex S., Bilodeau, Guillaume, Bilodeau, Pierre, Blackburn, Gwylim S., Cui, Mingming, Cusson, Michel, Doucet, Daniel, Griess, Verena C., Lafond, Valentine, Paradis, Gregory, Porth, Ilga, Prunier, Julien, Srivastava, Vivek, Tremblay, Emilie, Uzunovic, Adnan, Yemshanov, Denys, Hamelin, Richard C.. DOI 10.1007/S10340-018-1027-4
Development of novel EST-SSR markers for Ephedra sinica (Ephedraceae) by transcriptome database mining Applications in Plant Sciences, 2019. Jiao, Si-Qian, Sun, Yan-Qiang, Zhang, Dong-Xu, Gao, Qiong, Jin, Yuqing, Liu, Hui, Ma, Yongpeng, Yang, Yong, Porth, Ilga, Mao, Jian-Feng. DOI 10.1002/APS3.1212
Functional and morphological evolution in gymnosperms: A portrait of implicated gene families Evolutionary Applications, 2019. De La Torre, Amanda R., Piot, Anthony, Liu, Bobin, Wilhite, Benjamin, Weiss, Matthew, Porth, Ilga. DOI 10.1111/EVA.12839
Inter- And Intra-Generation Genomic Predictions for Douglas-fir Growth in Unobserved Environments bioRxiv, 2019. Ratcliffe, B., Thistlethwaite, F., El-Dien, O.G., Cappa, E.P., Porth, I., Klápště, J., Chen, C., Wang, T., Stoehr, M., El-Kassaby, Y.A.. DOI 10.1101/540765
Genome sequence of Malania oleifera, a tree with great value for nervonic acid production GigaScience, 2019. Xu, Chao-Qun, Liu, Hui, Zhou, Shan-Shan, Zhang, Dong-Xu, Zhao, Wei, Wang, Sihai, Chen, Fu, Sun, Yan-Qiang, Nie, Shuai, Jia, Kai-Hua, Jiao, Si-Qian, Zhang, Ren-Gang, Yun, Quan-Zheng, Guan, Wenbin, Wang, Xuewen, Gao, Qiong, Bennetzen, Jeffrey L., Maghuly, Fatemeh, Porth, Ilga, Van de Peer, Yves, Wang, Xiao-Ru, Ma, Yongpeng, Mao, Jian-Feng. DOI 10.1093/GIGASCIENCE/GIY164
Genomic selection of juvenile height across a single-generational gap in Douglas-fir Heredity, 2019. Thistlethwaite, Frances R., Ratcliffe, Blaise, Klapste, Jaroslav, Porth, Ilga, Chen, Charles, Stoehr, Michael U., El-Kassaby, Yousry A.. DOI 10.1038/S41437-018-0172-0
In-depth transcriptome characterization uncovers distinct gene family expansions for Cupressus gigantea important to this long-lived species' adaptability to environmental cues BMC Genomics, 2019. Zhou, Shan-Shan, Xing, Zhen, Liu, Hui, Hu, Xian-Ge, Gao, Qiong, Xu, Jie, Jiao, Si-Qian, Jia, Kai-Hua, Jin, Yu Qing, Zhao, Wei, Porth, Ilga, El-Kassaby, Yousry A., Mao, Jian-Feng. DOI 10.1186/S12864-019-5584-6
Localization of gene expression, tissue specificity of Populus xylosyltransferase genes by isolation and functional characterization of their promoters Plant Cell, Tissue and Organ Culture (PCTOC), 2018. Porth, Ilga, Maghuly, Fatemeh, El-Kassaby, Yousry A., Mansfield, Shawn. DOI 10.1007/s11240-018-1426-5
Biosurveillance of forest insects: part II—adoption of genomic tools by end user communities and barriers to integration Journal of Pest Science, 2018. Bilodeau, Pierre, Roe, Amanda D., Bilodeau, Guillaume, Blackburn, Gwylim S., Cui, Mingming, Cusson, Michel, Doucet, Daniel, Griess, Verena C., Lafond, Valentine M. A., Nilausen, Chelsea, Paradis, Gregory, Porth, Ilga, Prunier, Julien, Srivastava, Vivek, Stewart, Don, Torson, Alex S., Tremblay, Emilie, Uzunovic, Adnan, Yemshanov, Denys, Hamelin, Richard C.. DOI 10.1007/s10340-018-1001-1
Erratum to: Sexual homomorphism in dioecious trees: extensive tests fail to detect sexual dimorphism in Populus (Scientific Reports, (2017), 7, 1, (1831), 10.1038/s41598-017-01893-z) Scientific Reports, 2018. McKown, A.D., Klápště, J., Guy, R.D., Soolanayakanahally, R.Y., La Mantia, J., Porth, I., Skyba, O., Unda, F., Douglas, C.J., El-Kassaby, Y.A., Hamelin, R.C., Mansfield, S.D., Cronk, Q.C.B.. DOI 10.1038/s41598-018-35443-y
High-quality assembly of the reference genome for scarlet sage, Salvia splendens, an economically important ornamental plant GigaScience, 2018. Dong, Ai-Xiang, Xin, Hai-Bo, Li, Zi-Jing, Liu, Hui, Sun, Yan-Qiang, Nie, Shuai, Zhao, Zheng-Nan, Cui, Rong-Feng, Zhang, Ren-Gang, Yun, Quan-Zheng, Wang, Xin-Ning, Maghuly, Fatemeh, Porth, Ilga, Cong, Ri-Chen, Mao, Jian-Feng. DOI 10.1093/gigascience/giy068
Multienvironment genomic variance decomposition analysis of open-pollinated Interior spruce (Picea glauca x engelmannii) Molecular Breeding, 2018. El-Dien, Omnia Gamal, Ratcliffe, Blaise, Klápště, Jaroslav, Porth, Ilga, Chen, Charles, El-Kassaby, Yousry A.. DOI 10.1007/s11032-018-0784-3
Partial correlation analysis of transcriptomes helps detangle the growth and defense network in spruce New Phytologist, 2018. Porth, Ilga, White, Richard, Jaquish, Barry, Ritland, Kermit. DOI 10.1111/nph.15075
The complete chloroplast genome sequence annotation for Malania oleifera, a critically endangered and important bioresource tree Conservation Genetics Resources, 2018. Liu, Si-Si, Hu, Yi-Heng, Maghuly, Fatemeh, Porth, Ilga Mercedes, Mao, Jian-Feng. DOI 10.1007/s12686-018-1005-4
LD-annot: A Bioinformatics Tool to Automatically Provide Candidate SNPs With Annotations for Genetically Linked Genes Frontiers in Genetics, 2019/11/26. DOI 10.3389/fgene.2019.01192
Prospects: The Spruce Genome, a Model for Understanding Gymnosperm Evolution and Supporting Tree Improvement Efforts Compendium of Plant Genomes, 2020. DOI 10.1007/978-3-030-21001-4_13
The Spruce Genome Springer International Publishing, 2020. DOI 10.1007/978-3-030-21001-4
The Terpene Synthase Gene Family in Norway Spruce Compendium of Plant Genomes, 2020. DOI 10.1007/978-3-030-21001-4_11
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