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Louis Bernatchez

Professeur titulaire
(418) 656-2131, poste 403402
Louis.Bernatchez@bio.ulaval.ca
Pavillon Charles-Eugène-Marchand
1030, avenue de la Médecine
Local 1145

Unité de rattachement — Faculté
Sciences et génie

Infrastructure pour le suivi génomique de la biodiversité des écosytèmes d'eau douce
Programme: Fonds des leaders John-R.-Evans (FLJR)
Organisme(s) subventionnaire(s): Fondation Canadienne pour l'innovation (La), Institut de biologie intégrative et des systèmes, Ministère de l'Économie et de l'Innovation
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 janvier 2023 au 24 mai 2024

iTrackDNA: Non-Destructive Precision Genomics for Environmental Impact Tracking in a Global Climate Change Era
Programme: Projets de recherche appliquée à grande échelle - Large-Scale Applied Research Project
Organisme(s) subventionnaire(s): Genome British Columbia, Fonds de recherche du Québec - Nature et technologies, Génome Québec, Génome Canada, Ministère des Forêts, de la Faune et des Parcs, Ecofish Research
Type de financement: Subvention
Établissement tête: University of Victoria
Du 1 octobre 2021 au 30 septembre 2025

Genovalia - Phase 1
Programme: Programme d’intégration de la génomique
Organisme(s) subventionnaire(s): Université Laval - Fonds internes, Génome Québec
Type de financement: Subvention
Établissement tête: Université Laval
Du 31 mars 2021 au 31 mars 2024

Déterminismes moléculaires et sélectifs du maintien du potentiel adaptatif dans un écosystème aquatique hétérogène.
Programme: Subventions à la découverte SD (individuelles et d'équipe)
Organisme(s) subventionnaire(s): Conseil de recherches en sciences naturelles et génie Canada, Secrétariat Inter-Conseils (Canada) (CRSH, CRSNG, IRSC)
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 avril 2020 au 31 mars 2025

Développement et application de protocoles innovants d'ensemencement et de suivi pour la restauration des populations du saumon atlantique
Programme: Subventions de recherche et développement coopérative (RDC)
Organisme(s) subventionnaire(s): Société saumon de la rivière Romaine, Conseil de recherches en sciences naturelles et génie Canada, Ministère des Forêts, de la Faune et des Parcs, Hydro-Québec
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 mars 2020 au 28 février 2025

FISHES : Fostering Indigenous Small-scale fisheries for Health, Economy, and food Security
Programme: Projets de recherche appliquée à grande échelle - Large-Scale Applied Research Project
Organisme(s) subventionnaire(s): Gouvernement du Nunavut, MITACS Inc., Grand Conseil des Cris du Québec (Grand Council of the Crees), Ministère de l'Économie et de l'Innovation, Niskamoon Corporation, Génome Canada, Fonds de recherche du Québec - Nature et technologies, Génome Québec, Université Concordia, Ministry of Economic development, Job Creation and Trade, Eeyou Marine Region Wildlife Board, Université de Carleton
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 octobre 2019 au 31 mars 2025

FISHES Activité 6 Project management
Programme: Projets de recherche appliquée à grande échelle - Large-Scale Applied Research Project
Organisme(s) subventionnaire(s): Génome Québec
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 septembre 2019 au 31 mars 2025

FISHES Transferts externes
Programme: Projets de recherche appliquée à grande échelle - Large-Scale Applied Research Project
Organisme(s) subventionnaire(s): Génome Québec
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 septembre 2019 au 31 mars 2025

FISHES Activités 1-4 Genomic research
Programme: Projets de recherche appliquée à grande échelle - Large-Scale Applied Research Project
Organisme(s) subventionnaire(s): Génome Québec
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 septembre 2019 au 31 mars 2025

FISHES Activité 5 GE3LS
Programme: Projets de recherche appliquée à grande échelle - Large-Scale Applied Research Project
Organisme(s) subventionnaire(s): Génome Québec
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 septembre 2019 au 31 mars 2025

Ressources Aquatiques Québec
Programme: Regroupements stratégiques NT
Organisme(s) subventionnaire(s): Université Laval - Fonds internes, Fonds de recherche du Québec - Nature et technologies
Type de financement: Subvention
Établissement tête: Université du Québec à Rimouski - UQAR
Du 1 avril 2019 au 31 mars 2026

Genomics for developing the first Canadian production ready strain of selectively bred Eastern Oyster
Programme: Programme de partenariats pour les applications de la génomique (PPAG)
Organisme(s) subventionnaire(s): Génome Québec, Génome Canada
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 avril 2019 au 31 décembre 2024

Production d'omble de fontaine adaptée aux changements climatiques: évaluation de l'importance des effets épigénétiques
Programme: Subvention de partenariat stratégique (SPS)
Organisme(s) subventionnaire(s): Secrétariat Inter-Conseils (Canada) (CRSH, CRSNG, IRSC), Fonds de recherche du Québec - Nature et technologies, Ouranos, Conseil de recherches en sciences naturelles et génie Canada, Université du Québec à Rimouski
Type de financement: Subvention
Établissement tête: Université Laval
Du 30 septembre 2018 au 30 septembre 2023

L'ADN environnemental comme nouvel outil de gestion de la faune piscicole au Québec
Programme: Subvention de partenariat stratégique (SPS)
Organisme(s) subventionnaire(s): Ministère des Forêts, de la Faune et des Parcs, Secrétariat Inter-Conseils (Canada) (CRSH, CRSNG, IRSC), Conseil de recherches en sciences naturelles et génie Canada, Société des établissements de plein air du Québec (SÉPAQ), Fonds de recherche du Québec - Nature et technologies
Type de financement: Subvention
Établissement tête: Université Laval
Du 30 septembre 2018 au 29 septembre 2023

Financements des 2 dernières années

Analyse génétique de saumons et ouananiches de la rivière Corneille
Organisme(s) subventionnaire(s): Fédération québécoise pour le saumon de l'atlantique
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 juillet 2020 au 31 décembre 2021

Plateforme d'Analyses Génomiques (PAG-IBIS)
Programme: Appel de projets en appui aux plateformes technologiques stratégiques
Organisme(s) subventionnaire(s): Ministère de l'Économie et de l'Innovation
Type de financement: Subvention
Établissement tête: Université Laval
Du 5 décembre 2019 au 31 mars 2023

Developing Genomic Tools for Improved Oyster Production in Eastern Canada
Programme: Accélération Québec (MITACS et gouvernement provincial)
Organisme(s) subventionnaire(s): MITACS Inc.
Type de financement: Subvention
Établissement tête: Université Laval
Du 15 avril 2019 au 14 avril 2022

American Eel : Utilizing modern techniques to assess conservation status in Texas
Organisme(s) subventionnaire(s): Texas Parks and Wildlife Department
Type de financement: Subvention
Établissement tête: Université Laval
Du 30 novembre 2017 au 31 août 2022

Integrating genomics, phenotypes and local ecological knowledge towards improving capelin stock management in Canadian Atlantic waters
Programme: Subventions de projets stratégiques (SPS)
Organisme(s) subventionnaire(s): Conseil de recherches en sciences naturelles et génie Canada
Type de financement: Subvention
Établissement tête: Université Laval
Du 30 septembre 2016 au 31 mai 2023

LARSEM: Laboratoire aquatique de recherche en sciences environnementales et médicales
Programme: Fonds d'innovation (FI)
Organisme(s) subventionnaire(s): Fondation Canadienne pour l'innovation (La), Université Laval - Fonds internes, Ministère de l'Enseignement supérieur, de la Recherche, de la Science
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 novembre 2015 au 31 décembre 2022

  • Philippe Hénault, Doctorat en biologie
  • Philippe Hénault, Maîtrise en biologie - avec mémoire
  • Florent Sylvestre, Doctorat en biologie
  • Océane Perrot, Doctorat en biologie
  • Raphaël Bouchard, Doctorat en biologie
  • Laurie Lecomte, Maîtrise en biologie - avec mémoire
  • Gabriela Ulmo Diaz, Doctorat en biologie
  • Alexandre Carbonneau, Maîtrise en biologie - avec mémoire
  • Clare Venney, Stage postdoctoral en biologie
  • Rose Ragot, Stage postdoctoral en biologie
  • Chloé Berger, Stage postdoctoral en biologie
  • Louarn Fauchet, Doctorat en biologie
  • Alexandre Carbonneau, Doctorat en biologie
  • Sann Delaive, Doctorat en biologie
  • Amanda Xuereb, Stage postdoctoral en biologie
  • Encadrements terminés dans les 5 dernières années

  • Jérémie Fuller, Maîtrise en biologie - avec mémoire
  • Olivier Morissette, Doctorat en biologie
  • Gratien Adoumandjali, Doctorat en biologie
  • Yann Dorant, Doctorat en biologie
  • Félix Plante, Maîtrise en biologie - avec mémoire
  • Noémie Leduc, Maîtrise en biologie - avec mémoire
  • Sann Delaive, Maîtrise en biologie - avec mémoire
  • Marie-Pier Dubois-Gagnon, Maîtrise en sciences forestières - avec mémoire
  • Émilie Carrier, Maîtrise en biologie - avec mémoire
  • Raphaël Bouchard, Maîtrise en biologie - avec mémoire
  • Maxime Gaudet-Boulay, Maîtrise en biologie - avec mémoire
  • Xavier Dallaire, Maîtrise en biologie - avec mémoire
  • Isabeau Caza-Allard, Maîtrise en biologie - avec mémoire
  • Publications des 5 dernières années

    Widespread deviant patterns of heterozygosity in whole-genome sequencing due to autopolyploidy, repeated elements, and duplication 2023/07/30. Xavier Dallaire, Raphael Bouchard, Philippe Hénault, Gabriela Ulmo-Diaz, Eric Normandeau, Claire Mérot, Louis Bernatchez, Jean-Sébastien Moore. DOI 10.1101/2023.07.27.550877

    How eDNA data filtration, sequence coverage, and primer selection influence assessment of fish communities in northern temperate lakes Environmental DNA, 2023/06/27. Erik García‐Machado, Eric Normandeau, Guillaume Côté, Louis Bernatchez. DOI 10.1002/edn3.444

    Design and validation of a high-density SNP array for the Eastern oyster (Crassostrea virginica) G3 Genes|Genomes|Genetics, 2023/03/26. Amanda Xuereb, Rodrigo Marín Nahuelpi, Eric Normandeau, Charles Babin, Martin Laporte, André Mallet, José M Yáñez, Martin Mallet, Louis Bernatchez. DOI 10.1093/g3journal/jkad071

    Natural hybridization reduces vulnerability to climate change Nature Climate Change, 2023/01/30. Chris J. Brauer, Jonathan Sandoval-Castillo, Katie Gates, Michael P. Hammer, Peter J. Unmack, Louis Bernatchez, Luciano B. Beheregaray. DOI 10.1038/s41558-022-01585-1

    Captive rearing effects on the methylome of Atlantic salmon after oceanic migration: sex-specificity and intergenerational stability 2022/10/07. Clare J. Venney, Raphaël Bouchard, Julien April, Eric Normandeau, Laurie Lecomte, Guillaume Côté, Louis Bernatchez. DOI 10.1101/2022.10.03.510655

    Relationship between brook charr (Salvelinus fontinalis) eDNA concentration and angling data in structured wildlife areas Environmental DNA, 2022/08/02. Maxime Gaudet‐Boulay, Erik García‐Machado, Martin Laporte, Matthew Yates, Bérénice Bougas, Cécilia Hernandez, Guillaume Côté, Amélie Gilbert, Louis Bernatchez. DOI 10.1002/edn3.341

    Thermal regime during parental sexual maturation, but not during offspring rearing, modulates DNA methylation in brook charr ( Salvelinus fontinalis ) Proceedings of the Royal Society B: Biological Sciences, 2022/05/11. Clare J. Venney, Kyle W. Wellband, Eric Normandeau, Carolyne Houle, Dany Garant, Céline Audet, Louis Bernatchez. DOI 10.1098/rspb.2022.0670

    Cage transplant experiment shows weak transport effect on relative abundance of fish community composition as revealed by eDNA metabarcoding Ecological Indicators, 2022. Laporte, M., Berger, C.S., García-Machado, E., Côté, G., Morissette, O., Bernatchez, L.. DOI 10.1016/j.ecolind.2022.108785

    Fuwen Wei—Recipient of the 2021 Molecular Ecology Prize Molecular Ecology, 2022. Hu, Y., Bernatchez, L.. DOI 10.1111/mec.16306

    Linking genetic, morphological, and behavioural divergence between inland island and mainland deer mice Heredity, 2022. Miller, J.M., Garant, D., Perrier, C., Juette, T., Jameson, J.W., Normandeau, E., Bernatchez, L., Réale, D.. DOI 10.1038/s41437-021-00492-z

    eDNA metabarcoding as a means to assess distribution of subterranean fish communities: Iranian blind cave fishes as a case study Environmental DNA, 2022. Hashemzadeh Segherloo, I., Tabatabaei, S.N., Abdolahi-Mousavi, E., Hernandez, C., Normandeau, E., Laporte, M., Boyle, B., Amiri, M., GhaedRahmati, N., Hallerman, E., Bernatchez, L.. DOI 10.1002/edn3.264

    DNA Transposon Expansion is Associated with Genome Size Increase in Mudminnows Genome Biology and Evolution, 2021/10/01. Robert Lehmann, Aleš Kovařík, Konrad Ocalewicz, Lech Kirtiklis, Andrea Zuccolo, Jesper N Tegner, Josef Wanzenböck, Louis Bernatchez, Dunja K Lamatsch, Radka Symonová. DOI 10.1093/gbe/evab228

    Assessing the effects of genotype-by-environment interaction on epigenetic, transcriptomic, and phenotypic response in a Pacific salmon G3 Genes|Genomes|Genetics, 2021/04/12. Kris A Christensen, Jérémy Le Luyer, Michelle T T Chan, Eric B Rondeau, Ben F Koop, Louis Bernatchez, Robert H Devlin. DOI 10.1093/g3journal/jkab021

    Comparing CRISPR‐Cas and qPCR eDNA assays for the detection of Atlantic salmon (Salmo salar L.) Environmental DNA, 2021/01. Molly‐Ann Williams, Cecilia Hernandez, Antóin M. O'Sullivan, Julien April, Fiona Regan, Louis Bernatchez, Anne Parle‐McDermott. DOI 10.1002/edn3.174

    The future of biodiversity monitoring and conservation utilizing environmental DNA Environmental DNA, 2021/01. Kristy Deiner, Hiroki Yamanaka, Louis Bernatchez. DOI 10.1002/edn3.178

    Using environmental DNA for biomonitoring of freshwater fish communities: Comparison with established gillnet surveys in a boreal hydroelectric impoundment Environmental DNA, 2021/01. Damien Boivin‐Delisle, Martin Laporte, Frédéric Burton, René Dion, Eric Normandeau, Louis Bernatchez. DOI 10.1002/edn3.135

    Epigenomic modifications induced by hatchery rearing persist in germ line cells of adult salmon after their oceanic migration Evolutionary Applications, 2021. Leitwein, M., Laporte, M., Le Luyer, J., Mohns, K., Normandeau, E., Withler, R., Bernatchez, L.. DOI 10.1111/eva.13235

    Genome-wide DNA methylation predicts environmentally-driven life history variation in a marine fish bioRxiv, 2021. Cayuela, H., Rougeux, C., Laporte, M., Mérot, C., Normandeau, E., Leitwein, M., Dorant, Y., Præbel, K., Kenchington, E., Clément, M., Sirois, P., Bernatchez, L.. DOI 10.1101/2021.01.28.428603

    The rise and fall of the ancient northern pike master sex determining gene eLife, 2021. Pan, Q., Feron, R., Jouanno, E., Darras, H., Herpin, A., Koop, B., Rondeau, E., Goetz, F.W., Larson, W.A., Bernatchez, L., Tringali, M., Curran, S.S., Saillant, E., Denys, G.P.J., von Hippel, F.A., Chen, S., López, J.A., Verreycken, H., Ocalewicz, K., Guyomard, R., Eche, C., Lluch, J., Roques, C., Hu, H., Tabor, R., Dehaan, P., Nichols, K.M., Journot, L., Parrinello, H., Klopp, C., Interesova, E.A., Trifonov, V., Schartl, M., Postlethwait, J., Guiguen, Y.. DOI 10.7554/eLife.62858

    Adaptation of plasticity to projected maximum temperatures and across climatically defined bioregions Proceedings of the National Academy of Sciences, 2020/07/21. Jonathan Sandoval-Castillo, Katie Gates, Chris J. Brauer, Steve Smith, Louis Bernatchez, Luciano B. Beheregaray. DOI 10.1073/pnas.1921124117

    60 specific eDNA qPCR assays to detect invasive, threatened, and exploited freshwater vertebrates and invertebrates in Eastern Canada Environmental DNA, 2020/07. Cecilia Hernandez, Bérénice Bougas, Alysse Perreault‐Payette, Anouk Simard, Guillaume Côté, Louis Bernatchez. DOI 10.1002/edn3.89

    The rise and fall of the ancient northern pike master sex determining gene 2020/06/01. Qiaowei Pan, Romain Feron, Elodie Jouanno, Hugo Darras, Amaury Herpin, Ben Koop, Eric Rondeau, Frederick W. Goetz, Wesley A. Larson, Louis Bernatchez, Mike Tringali, Stephen S. Curran, Eric Saillant, Gael P.J. Denys, Frank A. von Hippel, Songlin Chen, J. Andrés López, Hugo Verreycken, Konrad Ocalewicz, Rene Guyomard, Camille Eche, Jerome Lluch, Celine Roques, Hongxia Hu, Roger Tabor, Patrick DeHaan, Krista M. Nichols, Laurent Journot, Hugues Parrinello, Christophe Klopp, Elena A. Interesova, Vladimir Trifonov, Manfred Schartl, John Postlethwait, Yann Guiguen. DOI 10.1101/2020.05.31.125336

    Population structure and genomic evidence for local adaptation to freshwater and marine environments in anadromous Arctic Char (Salvelinus alpinus) throughout Nunavik, Québec, Canada 2020/04/29. Xavier Dallaire, Éric Normandeau, Julien Mainguy, Jean-Éric Tremblay, Louis Bernatchez, Jean-Sébastien Moore. DOI 10.1101/2020.04.29.066449

    Contrasted gene decay in subterranean vertebrates: Insights from cavefishes and fossorial mammals bioRxiv, 2020. Policarpo, M., Fumey, J., Lafargeas, P., Naquin, D., Thermes, C., Naville, M., Dechaud, C., Volff, J.-N., Cabau, C., Klopp, C., Møller, P.R., Bernatchez, L., García-Machado, E., Rétaux, S., Casane, D.. DOI 10.1101/2020.03.05.978213

    Copy number variants outperform SNPs to reveal genotype-temperature association in a marine species bioRxiv, 2020. Dorant, Y., Cayuela, H., Wellband, K., Laporte, M., Rougemont, Q., Mérot, C., Normandeau, E., Rochette, R., Bernatchez, L.. DOI 10.1101/2020.01.28.923490

    Evolution and genetics of bighead and silver carps: Native population conservation versus invasive species control Evolutionary Applications, 2020. Lu, G., Wang, C., Zhao, J., Liao, X., Wang, J., Luo, M., Zhu, L., Bernatzhez, L., Li, S.. DOI 10.1111/eva.12982

    Sexing a Monomorphic Plumage Seabird Using Morphometrics and Assortative Mating Waterbirds, 2020. Seyer, Y., Gauthier, G., Bernatchez, L., Therrien, J.-F.. DOI 10.1675/063.042.0403

    Using Haplotype Information for Conservation Genomics Trends in Ecology and Evolution, 2020. Leitwein, M., Duranton, M., Rougemont, Q., Gagnaire, P.-A., Bernatchez, L.. DOI 10.1016/j.tree.2019.10.012

    The role of recombination on genome‐wide patterns of local ancestry exemplified by supplemented brook charr populations Molecular Ecology, 2019/11. Maeva Leitwein, Hugo Cayuela, Anne‐Laure Ferchaud, Éric Normandeau, Pierre‐Alexandre Gagnaire, Louis Bernatchez. DOI 10.1111/mec.15256

    Adaptive and maladaptive genetic diversity in small populations; Insights from the Brook Charr (Salvelinus fontinalis) case study bioRxiv, 2019. Ferchaud, A.-L., Leitwein, M., Laporte, M., Boivin-Delisle, D., Bougas, B., Hernandez, C., Normandeau, É., Thibault, I., Bernatchez, L.. DOI 10.1101/660621

    Author Correction: Effects of sampling effort on biodiversity patterns estimated from environmental DNA metabarcoding surveys (Scientific Reports, (2018), 8, 1, (8843), 10.1038/s41598-018-27048-2) Scientific Reports, 2019. Grey, E.K., Bernatchez, L., Cassey, P., Deiner, K., Deveney, M., Howland, K.L., Lacoursière-Roussel, A., Leong, S.C.Y., Li, Y., Olds, B., Pfrender, M.E., Prowse, T.A.A., Renshaw, M.A., Lodge, D.M.. DOI 10.1038/s41598-019-43804-4

    Balancing selection via life-history trade-offs maintains an inversion polymorphism in a seaweed fly bioRxiv, 2019. Mérot, C., Llaurens, V., Normandeau, E., Bernatchez, L., Wellenreuther, M.. DOI 10.1101/648584

    Comparing Pool-seq, Rapture, and GBS genotyping for inferring weak population structure: The American lobster (Homarus americanus) as a case study Ecology and Evolution, 2019. Dorant, Y., Benestan, L., Rougemont, Q., Normandeau, E., Boyle, B., Rochette, R., Bernatchez, L.. DOI 10.1002/ece3.5240

    Comparing genomic signatures of domestication in two Atlantic salmon (Salmo salar L.) populations with different geographical origins Evolutionary Applications, 2019. López, M.E., Benestan, L., Moore, J.-S., Perrier, C., Gilbey, J., Di Genova, A., Maass, A., Diaz, D., Lhorente, J.-P., Correa, K., Neira, R., Bernatchez, L., Yáñez, J.M.. DOI 10.1111/eva.12689

    Demographic history, linked selection, and recombination shape the genomic landscape of a broadly distributed Pacific salmon bioRxiv, 2019. Rougemont, Q., Moore, J.-S., Leroy, T., Normandeau, E., Rondeau, E.B., Withler, R.E., Van Doornik, D.M., Crane, P.A., Naish, K.A., Garza, J.C., Beacham, T.D., Koop, B.F., Bernatchez, L.. DOI 10.1101/732750

    Going beyond SNPs: The role of structural genomic variants in adaptive evolution and species diversification Molecular Ecology, 2019. Wellenreuther, M., Mérot, C., Berdan, E., Bernatchez, L.. DOI 10.1111/mec.15066

    Sex-specific co-expression networks and sex-biased gene expression in the salmonid Brook Charr Salvelinus fontinalis G3: Genes, Genomes, Genetics, 2019. Sutherland, B.J.G., Prokkola, J.M., Audet, C., Bernatchez, L.. DOI 10.1534/g3.118.200910

    Welcome to Environmental DNA! Environmental DNA, 2019. Bernatchez, L.. DOI 10.1002/edn3.18

    Putatively adaptive genetic variation in the giant California sea cucumber (Parastichopus californicus) as revealed by environmental association analysis of restriction‐site associated DNA sequencing data Molecular Ecology, 2018/12. Amanda Xuereb, Christopher M. Kimber, Janelle M. R. Curtis, Louis Bernatchez, Marie‐Josée Fortin. DOI 10.1111/mec.14942

    Domestication and Temperature Modulate Gene Expression Signatures and Growth in the Australasian Snapper Chrysophrys Auratus 2018/08/07. Maren Wellenreuther, Jérémy Le Luyer, Denham Cook, Peter A. Ritchie, Louis Bernatchez. DOI 10.1101/387084

    Polygenic selection drives the evolution of convergent transcriptomic landscapes across continents within a Nearctic sister-species complex 2018/04/30. Clément Rougeux, Pierre-Alexandre Gagnaire, Kim Praebel, Ole Seehausen, Louis Bernatchez. DOI 10.1101/311464

    A climate-associated multispecies cryptic cline in the northwest Atlantic Science Advances, 2018/03/02. Ryan R. E. Stanley, Claudio DiBacco, Ben Lowen, Robert G. Beiko, Nick W. Jeffery, Mallory Van Wyngaarden, Paul Bentzen, David Brickman, Laura Benestan, Louis Bernatchez, Catherine Johnson, Paul V. R. Snelgrove, Zeliang Wang, Brendan F. Wringe, Ian R. Bradbury. DOI 10.1126/sciadv.aaq0929

    Asymmetric oceanographic processes mediate connectivity and population genetic structure, as revealed by RADseq, in a highly dispersive marine invertebrate (Parastichopus californicus) Molecular Ecology, 2018. Xuereb, A., Benestan, L., Normandeau, É., Daigle, R.M., Curtis, J.M.R., Bernatchez, L., Fortin, M.-J.. DOI 10.1111/mec.14589

    Combining population genomics and forward simulations to investigate stocking impacts: A case study of Muskellunge (Esox masquinongy) from the St. Lawrence River basin bioRxiv, 2018. Rougemont, Q., Carrier, A., Leluyer, J., Ferchaud, A.-L., Farrell, J.M., Hatin, D., Brodeur, P., Bernatchez, L.. DOI 10.1101/363283

    Demographic and genetic approaches to study dispersal in wild animal populations: A methodological review Molecular Ecology, 2018. Cayuela, H., Rougemont, Q., Prunier, J.G., Moore, J.-S., Clobert, J., Besnard, A., Bernatchez, L.. DOI 10.1111/mec.14848

    Effects of sampling effort on biodiversity patterns estimated from environmental DNA metabarcoding surveys Scientific Reports, 2018. Grey, E.K., Bernatchez, L., Cassey, P., Deiner, K., Deveney, M., Howland, K.L., Lacoursière-Roussel, A., Leong, S.C.Y., Li, Y., Olds, B., Pfrender, M.E., Prowse, T.A.A., Renshaw, M.A., Lodge, D.M.. DOI 10.1038/s41598-018-27048-2

    Holobionts and ecological speciation: the intestinal microbiota of lake whitefish species pairs Microbiome, 2018. Sevellec, M., Derome, N., Bernatchez, L.. DOI 10.1186/s40168-018-0427-2

    Next-generation conservation genetics and biodiversity monitoring Evolutionary Applications, 2018. Hunter, M.E., Hoban, S.M., Bruford, M.W., Segelbacher, G., Bernatchez, L.. DOI 10.1111/eva.12661

    Optimising the detection of marine taxonomic richness using environmental DNA metabarcoding: The effects of filter material, pore size and extraction method Metabarcoding and Metagenomics, 2018. Deiner, K., Lopez, J., Bourne, S., Holman, L.E., Seymour, M., Grey, E.K., Lacoursière-Roussel, A., Li, Y., Renshaw, M.A., Pfrender, M.E., Rius, M., Bernatchez, L., Lodge, D.M.. DOI 10.3897/mbmg.2.28963

    Predicting the genetic impact of stocking in Brook Charr (Salvelinus fontinalis) by combining RAD sequencing and modeling of explanatory variables Evolutionary Applications, 2018. Létourneau, J., Ferchaud, A.-L., Le Luyer, J., Laporte, M., Garant, D., Bernatchez, L.. DOI 10.1111/eva.12566

    The lobster node of the CFRN: Co-constructed and collaborative research on productivity, stock structure, and connectivity in the American Lobster (Homarus americanus) Canadian Journal of Fisheries and Aquatic Sciences, 2018. Rochette, R., Sainte-Marie, B., Allain, M., Baker, J., Bernatchez, L., Boudreau, V., Comeau, M., Côté, J., Miron, G., Ramsay, L., Squires, K., Tremblay, M.J.. DOI 10.1139/cjfas-2016-0426

    A qPCR-based method to detect the eel parasitic nematode Anguillicola crassus in intermediate and final hosts Parasitology Research, 2023/06. Chloé Suzanne Berger, Bérénice Bougas, Guillaume Côté, Jean-François Dumont, Louis Bernatchez. DOI 10.1007/s00436-023-07843-1

    Distribution of the boreal chorus frog (Pseudacris maculata) in an urban environment using environmental DNA Environmental DNA, 2022/03. Marie‐Pier Dubois‐Gagnon, Louis Bernatchez, Marc Bélisle, Yohann Dubois, Marc J. Mazerolle. DOI 10.1002/edn3.254

    Fish community shifts along a strong fluvial environmental gradient revealed by eDNA metabarcoding Environmental DNA, 2022/01. Erik García‐Machado, Martin Laporte, Eric Normandeau, Cecilia Hernández, Guillaume Côté, Yves Paradis, Marc Mingelbier, Louis Bernatchez. DOI 10.1002/edn3.221

    A chromosome-anchored genome assembly for Lake Trout (Salvelinus namaycush) Molecular Ecology Resources, 2022. Smith, S.R., Normandeau, E., Djambazian, H., Nawarathna, P.M., Berube, P., Muir, A.M., Ragoussis, J., Penney, C.M., Scribner, K.T., Luikart, G., Wilson, C.C., Bernatchez, L.. DOI 10.1111/1755-0998.13483

    A melting pot in the Arctic: Analysis of mitogenome variation in Arctic char (Salvelinus alpinus) reveals a 1000-km contact zone between highly divergent lineages Ecology of Freshwater Fish, 2022. Jacobsen, M.W., Jensen, N.W., Nygaard, R., Præbel, K., Jónsson, B., Nielsen, N.H., Pujolar, J.M., Fraser, D.J., Bernatchez, L., Hansen, M.M.. DOI 10.1111/eff.12633

    Chromosome-level assembly reveals a putative Y-autosomal fusion in the sex determination system of the Greenland Halibut (Reinhardtius hippoglossoides) G3: Genes, Genomes, Genetics, 2022. Ferchaud, A.-L., Mérot, C., Normandeau, E., Ragoussis, J., Babin, C., Djambazian, H., Bérubé, P., Audet, C., Treble, M., Walkusz, W., Bernatchez, L.. DOI 10.1093/G3JOURNAL/JKAB376

    Genome assembly, structural variants, and genetic differentiation between Lake Whitefish young species pairs (Coregonus sp.) with long and short reads bioRxiv, 2022. Mérot, C., Stenløkk, K.S.R., Venney, C., Laporte, M., Moser, M., Normandeau, E., Árnyasi, M., Kent, M., Rougeux, C., Flynn, J.M., Lien, S., Bernatchez, L.. DOI 10.1101/2022.01.15.476463

    Transgenerational plasticity of dispersal-related traits in a ciliate: genotype-dependency and fitness consequences Oikos, 2022. Cayuela, H., Jacob, S., Schtickzelle, N., Verdonck, R., Philippe, H., Laporte, M., Huet, M., Bernatchez, L., Legrand, D.. DOI 10.1111/oik.08846

    Environment-driven reprogramming of gamete DNA methylation occurs during maturation and is transmitted intergenerationally in Atlantic Salmon G3 Genes|Genomes|Genetics, 2021/12/08. Kyle Wellband, David Roth, Tommi Linnansaari, R Allen Curry, Louis Bernatchez. DOI 10.1093/g3journal/jkab353

    Environmental DNA as a detection and quantitative tool for stream‐dwelling salamanders: A comparison with the traditional active search method Environmental DNA, 2021/11. Félix Plante, Patrice Bourgault, Yohann Dubois, Louis Bernatchez. DOI 10.1002/edn3.233

    Benchmarking bioinformatic tools for fast and accurate eDNA metabarcoding species identification Molecular Ecology Resources, 2021/10. Laetitia Mathon, Alice Valentini, Pierre‐Edouard Guérin, Eric Normandeau, Cyril Noel, Clément Lionnet, Emilie Boulanger, Wilfried Thuiller, Louis Bernatchez, David Mouillot, Tony Dejean, Stéphanie Manel. DOI 10.1111/1755-0998.13430

    Incorporating putatively neutral and adaptive genomic data into marine conservation planning Conservation Biology, 2021/06. Amanda Xuereb, Cassidy C. D'Aloia, Marco Andrello, Louis Bernatchez, Marie‐Josée Fortin. DOI 10.1111/cobi.13609

    Uncovering endemism in a lake of invasive species introgression Molecular Ecology, 2021/02. Iva Popovic, Louis Bernatchez. DOI 10.1111/mec.15801

    Comparing environmental metabarcoding and trawling survey of demersal fish communities in the Gulf of St. Lawrence, Canada Environmental DNA, 2021/01. Seyedeh Fatemeh Afzali, Hugo Bourdages, Martin Laporte, Claire Mérot, Eric Normandeau, Céline Audet, Louis Bernatchez. DOI 10.1002/edn3.111

    A compendium of novel genomics technologies provides a chromosome-scale assembly and insights into the sex determining system of the Greenland Halibut bioRxiv, 2021. Ferchaud, A.-L., Mérot, C., Normandeau, E., Ragoussis, I., Babin, C., Djambazian, H., Bérubé, P., Audet, C., Treble, M., Walkusz, W., Bernatchez, L.. DOI 10.1101/2021.06.18.449053

    A genomic perspective on an old question: Salmo trouts or Salmo trutta (Teleostei: Salmonidae)? Molecular Phylogenetics and Evolution, 2021. Hashemzadeh Segherloo, I., Freyhof, J., Berrebi, P., Ferchaud, A.-L., Geiger, M., Laroche, J., Levin, B.A., Normandeau, E., Bernatchez, L.. DOI 10.1016/j.ympev.2021.107204

    Contrasting Gene Decay in Subterranean Vertebrates: Insights from Cavefishes and Fossorial Mammals Molecular Biology and Evolution, 2021. Policarpo, M., Fumey, J., Lafargeas, P., Naquin, D., Thermes, C., Naville, M., Dechaud, C., Volff, J.-N., Cabau, C., Klopp, C., Møller, P.R., Bernatchez, L., García-Machado, E., Rétaux, S., Casane, D.. DOI 10.1093/molbev/msaa249

    Correction to: Genetic differentiation in the mountainous star coral Orbicella faveolata around Cuba (Coral Reefs, (2018), 37, 4, (1217-1227), 10.1007/s00338-018-1722-x) Coral Reefs, 2021. Ulmo-Díaz, G., Casane, D., Bernatchez, L., González-Díaz, P., Apprill, A., Castellanos-Gell, J., Hernández-Fernández, L., García-Machado, E.. DOI 10.1007/s00338-021-02084-z

    Long distance migration is a major factor driving local adaptation at continental scale in Coho salmon bioRxiv, 2021. Rougemont, Q., Xuereb, A., Dallaire, X., Moore, J.-S., Normandeau, E., Rondeau, E.B., Withler, R.E., van Doornik, D.M., Crane, P.A., Naish, K.A., Garza, J.C., Beacham, T.D., Koop, B.F., Bernatchez, L.. DOI 10.1101/2021.11.22.469546

    Low effective population size in the genetically bottlenecked Australian sea lion is insufficient to maintain genetic variation Animal Conservation, 2021. Bilgmann, K., Armansin, N., Ferchaud, A.L., Normandeau, E., Bernatchez, L., Harcourt, R., Ahonen, H., Lowther, A., Goldsworthy, S.D., Stow, A.. DOI 10.1111/acv.12688

    Population genomics of the southern Caspian Sea Vobla Rutilus lacustris Hydrobiologia, 2021. Hashemzadeh Segherloo, I., Ghojoghi, F., Tabatabaei, S.N., Normandeau, E., Hernandez, C., Hallerman, E., Boyle, B., Bernatchez, L.. DOI 10.1007/s10750-020-04442-4

    Thermal adaptation rather than demographic history drives genetic structure inferred by copy number variants in a marine fish Molecular Ecology, 2021. Cayuela, H., Dorant, Y., Mérot, C., Laporte, M., Normandeau, E., Gagnon-Harvey, S., Clément, M., Sirois, P., Bernatchez, L.. DOI 10.1111/mec.15835

    Copy number variants outperform SNPs to reveal genotype–temperature association in a marine species Molecular Ecology, 2020/12. Yann Dorant, Hugo Cayuela, Kyle Wellband, Martin Laporte, Quentin Rougemont, Claire Mérot, Eric Normandeau, Rémy Rochette, Louis Bernatchez. DOI 10.1111/mec.15565

    Environment-driven reprogramming of gamete DNA methylation occurs during maturation and is transmitted intergenerationally in salmon 2020/11/26. Kyle Wellband, David Roth, Tommi Linnansaari, R. Allen Curry, Louis Bernatchez. DOI 10.1101/2020.11.25.396069

    Groundtruthing of pelagic forage fish detected by hydroacoustics in a whale feeding area using environmental DNA Environmental DNA, 2020/10. Chloé Suzanne Berger, Bérénice Bougas, Samuel Turgeon, Sophia Ferchiou, Nadia Ménard, Louis Bernatchez. DOI 10.1002/edn3.73

    Caged fish experiment and hydrodynamic bidimensional modeling highlight the importance to consider 2D dispersion in fluvial environmental DNA studies Environmental DNA, 2020/07. Martin Laporte, Bérénice Bougas, Guillaume Côté, Olivier Champoux, Yves Paradis, Jean Morin, Louis Bernatchez. DOI 10.1002/edn3.88

    Pathway to Increase Standards and Competency of eDNA Surveys (PISCeS)—Advancing collaboration and standardization efforts in the field of eDNA Environmental DNA, 2020/07. Tzitziki Loeza‐Quintana, Cathryn L. Abbott, Daniel D. Heath, Louis Bernatchez, Robert H. Hanner. DOI 10.1002/edn3.112

    Balancing selection via life-history trade-offs maintains an inversion polymorphism in a seaweed fly Nature Communications, 2020/02/03. Claire Mérot, Violaine Llaurens, Eric Normandeau, Louis Bernatchez, Maren Wellenreuther. DOI 10.1038/s41467-020-14479-7

    Adaptive and maladaptive genetic diversity in small populations: Insights from the Brook Charr (Salvelinus fontinalis) case study Molecular Ecology, 2020. Ferchaud, A.-L., Leitwein, M., Laporte, M., Boivin-Delisle, D., Bougas, B., Hernandez, C., Normandeau, É., Thibault, I., Bernatchez, L.. DOI 10.1111/mec.15566

    Chromosomal rearrangements represent modular cassettes for local adaptation across different geographic scales bioRxiv, 2020. Mérot, C., Berdan, E., Cayuela, H., Djambazian, H., Ferchaud, A.-L., Laporte, M., Normandeau, E., Ragoussis, J., Wellenreuther, M., Bernatchez, L.. DOI 10.1101/2020.12.28.424584

    Demographic history shaped geographical patterns of deleterious mutation load in a broadly distributed Pacific Salmon PLoS Genetics, 2020. Rougemont, Q., Moore, J.-S., Leroy, T., Normandeau, E., Rondeau, E.B., Withler, R.E., van Doornik, D.M., Crane, P.A., Naish, K.A., Garza, J.C., Beacham, T.D., Koop, B.F., Bernatchez, L.. DOI 10.1371/JOURNAL.PGEN.1008348

    Detecting fine-scale population structure in the age of genomics: a case study of lake sturgeon in the Great Lakes Fisheries Research, 2020. Whitaker, J.M., Price, L.E., Boase, J.C., Bernatchez, L., Welsh, A.B.. DOI 10.1016/j.fishres.2020.105646

    Genetic population structure and variation at phenology-related loci in anadromous Arctic char (Salvelinus alpinus) Ecology of Freshwater Fish, 2020. Madsen, R.P.A., Jacobsen, M.W., O'Malley, K.G., Nygaard, R., Præbel, K., Jónsson, B., Pujolar, J.M., Fraser, D.J., Bernatchez, L., Hansen, M.M.. DOI 10.1111/eff.12504

    Resolving the genetic paradox of invasions: Preadapted genomes and postintroduction hybridization of bigheaded carps in the Mississippi River Basin Evolutionary Applications, 2020. Wang, J., Gaughan, S., Lamer, J.T., Deng, C., Hu, W., Wachholtz, M., Qin, S., Nie, H., Liao, X., Ling, Q., Li, W., Zhu, L., Bernatchez, L., Wang, C., Lu, G.. DOI 10.1111/eva.12863

    Shared ancestral polymorphisms and chromosomal rearrangements as potential drivers of local adaptation in a marine fish Molecular Ecology, 2020. Cayuela, H., Rougemont, Q., Laporte, M., Mérot, C., Normandeau, E., Dorant, Y., Tørresen, O.K., Hoff, S.N.K., Jentoft, S., Sirois, P., Castonguay, M., Jansen, T., Praebel, K., Clément, M., Bernatchez, L.. DOI 10.1111/mec.15499

    DNA methylation reprogramming, TE derepression, and postzygotic isolation of nascent animal species Science Advances, 2019/10/04. M. Laporte, J. Le Luyer, C. Rougeux, A.-M. Dion-Côté, M. Krick, L. Bernatchez. DOI 10.1126/sciadv.aaw1644

    The role of recombination on genome-wide patterns of local ancestry exemplified by supplemented Brook Charr populations 2019/07/15. Maeva Leitwein, Hugo Cayuela, Anne-Laure Ferchaud, Éric Normandeau, Pierre-Alexandre Gagnaire, Louis Bernatchez. DOI 10.1101/702696

    Adaptation of plasticity to predicted climates in Australian rainbowfishes (Melanotaenia) across climatically defined bioregions bioRxiv, 2019. Sandoval-Castillo, J., Gates, K., Brauer, C.J., Smith, S., Bernatchez, L., Beheregaray, L.B.. DOI 10.1101/859769

    Combining population genomics and forward simulations to investigate stocking impacts: A case study of Muskellunge (Esox masquinongy) from the St. Lawrence River basin Evolutionary Applications, 2019. Rougemont, Q., Carrier, A., Le Luyer, J., Ferchaud, A.-L., Farrell, J.M., Hatin, D., Brodeur, P., Bernatchez, L.. DOI 10.1111/eva.12765

    Comparing eDNA metabarcoding and species collection for documenting Arctic metazoan biodiversity Environmental DNA, 2019. Leduc, N., Lacoursière-Roussel, A., Howland, K.L., Archambault, P., Sevellec, M., Normandeau, E., Dispas, A., Winkler, G., McKindsey, C.W., Simard, N., Bernatchez, L.. DOI 10.1002/edn3.35

    Comparison of coded-wire tagging with parentage-based tagging and genetic stock identification in a large-scale coho salmon fisheries application in British Columbia, Canada Evolutionary Applications, 2019. Beacham, T.D., Wallace, C., Jonsen, K., McIntosh, B., Candy, J.R., Willis, D., Lynch, C., Moore, J.-S., Bernatchez, L., Withler, R.E.. DOI 10.1111/eva.12711

    The genomic pool of standing structural variation outnumbers single nucleotide polymorphism by threefold in the marine teleost Chrysophrys auratus Molecular Ecology, 2019. Catanach, A., Crowhurst, R., Deng, C., David, C., Bernatchez, L., Wellenreuther, M.. DOI 10.1111/mec.15051

    The role of ecotype-environment interactions in intraspecific trophic niche partitioning subsequent to stocking Ecological Applications, 2019. Morissette, O., Sirois, P., Wilson, C.C., Laporte, M., Bernatchez, L.. DOI 10.1002/eap.1857

    The role of genomic vs. epigenomic variation in shaping patterns of convergent transcriptomic variation across continents in a young species complex bioRxiv, 2019. Rougeux, C., Laporte, M., Gagnaire, P.-A., Bernatchez, L.. DOI 10.1101/784231

    Transgenerational dispersal plasticity and its fitness consequences are under genetic control bioRxiv, 2019. Cayuela, H., Jacob, S., Schtickzelle, N., Verdonck, R., Philippe, H., Laporte, M., Huet, M., Bernatchez, L., Legrand, D.. DOI 10.1101/791210

    Chromosomal fusion and life history-associated genomic variation contribute to within-river local adaptation of Atlantic salmon 2018/06/15. Kyle Wellband, Claire Mérot, Tommi Linnansaari, J. A. K. Elliott, R. Allen Curry, Louis Bernatchez. DOI 10.1101/347724

    Assessing the efficiency of eDNA metabarcoding for documenting patterns of metazoan communities in the Arctic. 2018/03/29. Noémie Leduc, Louis Bernatchez, Philippe Archambault, Kimberly Howland, Antoine Dispas, Gesche Winkler, Anaïs Lacoursière Roussel. DOI 10.7287/peerj.preprints.26798v1

    Do differences in the activities of carbohydrate metabolism enzymes between Lake Whitefish ecotypes match predictions from transcriptomic studies? Comparative Biochemistry and Physiology Part - B: Biochemistry and Molecular Biology, 2018. Dalziel, A.C., Laporte, M., Guderley, H., Bernatchez, L.. DOI 10.1016/j.cbpb.2017.08.001

    Genetic differentiation in the mountainous star coral Orbicella faveolata around Cuba Coral Reefs, 2018. Ulmo-Díaz, G., Casane, D., Bernatchez, L., González-Díaz, P., Apprill, A., Castellanos-Gell, J., Hernández-Fernández, L., García-Machado, E.. DOI 10.1007/s00338-018-1722-x

    Impact of supplementation on deleterious mutation distribution in an exploited salmonid Evolutionary Applications, 2018. Ferchaud, A.-L., Laporte, M., Perrier, C., Bernatchez, L.. DOI 10.1111/eva.12660

    Inferring phylogenetic structure, hybridization and divergence times within Salmoninae (Teleostei: Salmonidae) using RAD-sequencing Molecular Phylogenetics and Evolution, 2018. Lecaudey, L.A., Schliewen, U.K., Osinov, A.G., Taylor, E.B., Bernatchez, L., Weiss, S.J.. DOI 10.1016/j.ympev.2018.02.022

    Introgressive hybridization between wild and domestic individuals and its relationship with parasitism in brook charr Salvelinus fontinalis Journal of Fish Biology, 2018. Gossieaux, P., Sirois, P., Bernatchez, L., Garant, D.. DOI 10.1111/jfb.13752

    Range-wide regional assignment of Atlantic salmon (Salmo salar) using genome wide single-nucleotide polymorphisms Fisheries Research, 2018. Jeffery, N.W., Wringe, B.F., McBride, M.C., Hamilton, L.C., Stanley, R.R.E., Bernatchez, L., Kent, M., Clément, M., Gilbey, J., Sheehan, T.F., Bentzen, P., Bradbury, I.R.. DOI 10.1016/j.fishres.2018.05.017

    Recent advances in conservation and population genomics data analysis Evolutionary Applications, 2018. Hendricks, S., Anderson, E.C., Antao, T., Bernatchez, L., Forester, B.R., Garner, B., Hand, B.K., Hohenlohe, P.A., Kardos, M., Koop, B., Sethuraman, A., Waples, R.S., Luikart, G.. DOI 10.1111/eva.12659

    Supplementation stocking of Lake Trout (Salvelinus namaycush) in small boreal lakes: Ecotypes influence on growth and condition PLoS ONE, 2018. Morissette, O., Sirois, P., Lester, N.P., Wilson, C.C., Bernatchez, L.. DOI 10.1371/journal.pone.0200599

    The demographic history of Atlantic salmon (Salmo salar) across its distribution range reconstructed from approximate Bayesian computations* Evolution, 2018. Rougemont, Q., Bernatchez, L.. DOI 10.1111/evo.13486

    Beyond species detection—leveraging environmental DNA and environmental RNA to push beyond presence/absence applications Environmental DNA, 2023/07/28. M. C. Yates, E. Furlan, B. Thalinger, H. Yamanaka, L. Bernatchez. DOI 10.1002/edn3.459

    Searching for intralocus sexual conflicts in the three-spined stickleback (Gasterosteus aculeatus) genome Evolution, 2023/06/29. Florent Sylvestre, Claire Mérot, Eric Normandeau, Louis Bernatchez. DOI 10.1093/evolut/qpad075

    Searching for intra-locus sexual conflicts in the three-spined stickleback (Gasterosteus aculeatus) genome 2022/07/05. Florent Sylvestre, Claire Mérot, Eric Normandeau, Louis Bernatchez. DOI 10.1101/2022.07.04.498749

    Strong Parallel Differential Gene Expression Induced by Hatchery Rearing Weakly Associated with Methylation Signals in Adult Coho Salmon (O. kisutch) Genome Biology and Evolution, 2022/04/10. Maeva Leitwein, Kyle Wellband, Hugo Cayuela, Jérémy Le Luyer, Kayla Mohns, Ruth Withler, Louis Bernatchez. DOI 10.1093/gbe/evac036

    Effect of biotic and abiotic factors on the production and degradation of fish environmental DNA: An experimental evaluation Environmental DNA, 2022/03. Isabeau Caza‐Allard, Martin Laporte, Guillaume Côté, Julien April, Louis Bernatchez. DOI 10.1002/edn3.266

    Effects of stocking at the parr stage on the reproductive fitness and genetic diversity of a wild population of Atlantic salmon (Salmo salar L.) Evolutionary Applications, 2022. Bouchard, R., Wellband, K., Lecomte, L., Bernatchez, L., April, J.. DOI 10.1111/eva.13374

    Fish out of water: Genomic insights into persistence of rainbowfish populations in the desert Evolution, 2022. Attard, C.R.M., Sandoval-Castillo, J., Brauer, C.J., Unmack, P.J., Schmarr, D., Bernatchez, L., Beheregaray, L.B.. DOI 10.1111/evo.14399

    Long-distance migration is a major factor driving local adaptation at continental scale in Coho salmon Molecular Ecology, 2022. Rougemont, Q., Xuereb, A., Dallaire, X., Moore, J.-S., Normandeau, E., Rondeau, E.B., Withler, R.E., Van Doornik, D.M., Crane, P.A., Naish, K.A., Garza, J.C., Beacham, T.D., Koop, B.F., Bernatchez, L.. DOI 10.1111/mec.16339

    Thermal regime during parental sexual maturation, but not during offspring rearing, modulates DNA methylation in brook charr (Salvelinus fontinalis) bioRxiv, 2022. Venney, C.J., Wellband, K.W., Normandeau, E., Houle, C., Garant, D., Audet, C., Bernatchez, L.. DOI 10.1101/2022.02.25.481661

    Epigenetic inheritance and reproductive mode in plants and animals Trends in Ecology & Evolution, 2021/12. Dafni Anastasiadi, Clare J. Venney, Louis Bernatchez, Maren Wellenreuther. DOI 10.1016/j.tree.2021.08.006

    Proper environmental DNA metabarcoding data transformation reveals temporal stability of fish communities in a dendritic river system Environmental DNA, 2021/09. Martin Laporte, Emilie Reny‐Nolin, Victoria Chouinard, Cécilia Hernandez, Eric Normandeau, Bérénice Bougas, Caroline Côté, Sonja Behmel, Louis Bernatchez. DOI 10.1002/edn3.224

    A supergene in seaweed flies modulates male traits and female perception 2021/07/01. Swantje Enge, Claire Mérot, Raimondas Mozūraitis, Violeta Apšegaitė, Louis Bernatchez, Gerrit A. Martens, Sandra Radžiutė, Henrik Pavia, Emma L. Berdan. DOI 10.1101/2021.06.30.450538

    Genomic data support management of anadromous Arctic Char fisheries in Nunavik by highlighting neutral and putatively adaptive genetic variation Evolutionary Applications, 2021/07. Xavier Dallaire, Éric Normandeau, Julien Mainguy, Jean‐Éric Tremblay, Louis Bernatchez, Jean‐Sébastien Moore. DOI 10.1111/eva.13248

    Detecting community change in Arctic marine ecosystems using the temporal dynamics of environmental DNA Environmental DNA, 2021/05. Maelle Sevellec, Anaïs Lacoursière‐Roussel, Louis Bernatchez, Eric Normandeau, Eric Solomon, Andrew Arreak, LeeAnn Fishback, Kimberly Howland. DOI 10.1002/edn3.155

    Artificial rearing of atlantic salmon juveniles for supportive breeding programs induces long-term effects on gut microbiota after stocking Microorganisms, 2021. Lavoie, C., Wellband, K., Perreault, A., Bernatchez, L., Derome, N.. DOI 10.3390/microorganisms9091932

    Associative overdominance and negative epistasis shape genome-wide ancestry landscape in supplemented fish populations Genes, 2021. Leitwein, M., Cayuela, H., Bernatchez, L.. DOI 10.3390/genes12040524

    DNA transposon expansion is associated with genome size increase in mudminnows bioRxiv, 2021. Lehmann, R., Kovařík, A., Ocalewicz, K., Kirtiklis, L., Zuccolo, A., Tegner, J.N., Wanzenböck, J., Bernatchez, L., Lamatsch, D.K., Symonová, R.. DOI 10.1101/2021.06.07.447207

    Erratum: Demographic history shaped geographical patterns of deleterious mutation load in a broadly distributed Pacific Salmon (PLoS Genetics (2020) 16:8 (e1008348) DOI: 10.1371/journal.pgen.1008348) PLoS Genetics, 2021. Rougemont, Q., Moore, J.-S., Leroy, T., Normandeau, E., Rondeau, E.B., Withler, R.E., van Doornik, D.M., Crane, P.A., Naish, K.A., Garza, J.C., Beacham, T.D., Koop, B.F., Bernatchez, L.. DOI 10.1371/JOURNAL.PGEN.1009397

    Locally Adaptive Inversions Modulate Genetic Variation at Different Geographic Scales in a Seaweed Fly Molecular Biology and Evolution, 2021. Mérot, C., Berdan, E.L., Cayuela, H., Djambazian, H., Ferchaud, A.-L., Laporte, M., Normandeau, E., Ragoussis, J., Wellenreuther, M., Bernatchez, L.. DOI 10.1093/molbev/msab143

    Population genomics and history of speciation reveal fishery management gaps in two related redfish species (Sebastes mentella and Sebastes fasciatus) Evolutionary Applications, 2021. Benestan, L.M., Rougemont, Q., Senay, C., Normandeau, E., Parent, E., Rideout, R., Bernatchez, L., Lambert, Y., Audet, C., Parent, G.J.. DOI 10.1111/eva.13143

    Fine‐scale environmental heterogeneity shapes fluvial fish communities as revealed by eDNA metabarcoding Environmental DNA, 2020/10. Chloé Suzanne Berger, Cecilia Hernandez, Martin Laporte, Guillaume Côté, Yves Paradis, Dominique W. Kameni T., Eric Normandeau, Louis Bernatchez. DOI 10.1002/edn3.129

    Absence of founder effect and evidence for adaptive divergence in a recently introduced insular population of white‐tailed deer (Odocoileus virginianus) Molecular Ecology, 2020/01. Jérémie Fuller, Anne‐Laure Ferchaud, Martin Laporte, Jérémy Le Luyer, Theodore B. Davis, Steeve D. Côté, Louis Bernatchez. DOI 10.1111/mec.15317

    Accurate estimation of conservation unit contribution to coho salmon mixed-stock fisheries in British Columbia, Canada, using direct DNA sequencing for single nucleotide polymorphisms Canadian Journal of Fisheries and Aquatic Sciences, 2020. Beacham, T.D., Wallace, C., Jonsen, K., McIntosh, B., Candy, J.R., Rondeau, E.B., Moore, J.-S., Bernatchez, L., Withler, R.E.. DOI 10.1139/cjfas-2019-0339

    Deciphering lifelong thermal niche using otolith δ<sup>18</sup>O thermometry within supplemented lake trout (Salvelinus namaycush) populations Freshwater Biology, 2020. Morissette, O., Bernatchez, L., Wiedenbeck, M., Sirois, P.. DOI 10.1111/fwb.13497

    Effects of genetic origin on phenotypic divergence in Brook Trout populations stocked with domestic fish Ecosphere, 2020. Gossieaux, P., Lavoie, É., Sirois, P., Thibault, I., Bernatchez, L., Garant, D.. DOI 10.1002/ecs2.3119

    Estimating the contribution of Greenland Halibut (Reinhardtius hippoglossoides) stocks to nurseries by means of genotyping-by-sequencing: Sex and time matter Evolutionary Applications, 2020. Carrier, E., Ferchaud, A.-L., Normandeau, E., Sirois, P., Bernatchez, L.. DOI 10.1111/eva.12979

    Fine-scale population genetic structure of Endangered Caspian Sea trout, Salmo caspius: implications for conservation Hydrobiologia, 2020. Tabatabaei, S.N., Abdoli, A., Hashemzadeh Segherloo, I., Normandeau, E., Ahmadzadeh, F., Nejat, F., Bernatchez, L.. DOI 10.1007/s10750-020-04334-7

    Latitudinal variation in climate-associated genes imperils range edge populations Molecular Ecology, 2020. Smith, S., Brauer, C.J., Sasaki, M., Unmack, P.J., Guillot, G., Laporte, M., Bernatchez, L., Beheregaray, L.B.. DOI 10.1111/mec.15637

    Space invaders: Searching for invasive Smallmouth Bass (Micropterus dolomieu) in a renowned Atlantic Salmon (Salmo salar) river Ecology and Evolution, 2020. O'Sullivan, A.M., Samways, K.M., Perreault, A., Hernandez, C., Gautreau, M.D., Curry, R.A., Bernatchez, L.. DOI 10.1002/ece3.6088

    Speciation history of European (Anguilla anguilla) and American eel (A. rostrata), analysed using genomic data Molecular Ecology, 2020. Nikolic, N., Liu, S., Jacobsen, M.W., Jónsson, B., Bernatchez, L., Gagnaire, P.-A., Hansen, M.M.. DOI 10.1111/mec.15342

    The structural variation landscape in 492 Atlantic salmon genomes Nature Communications, 2020. Bertolotti, A.C., Layer, R.M., Gundappa, M.K., Gallagher, M.D., Pehlivanoglu, E., Nome, T., Robledo, D., Kent, M.P., Røsæg, L.L., Holen, M.M., Mulugeta, T.D., Ashton, T.J., Hindar, K., Sægrov, H., Florø-Larsen, B., Erkinaro, J., Primmer, C.R., Bernatchez, L., Martin, S.A.M., Johnston, I.A., Sandve, S.R., Lien, S., Macqueen, D.J.. DOI 10.1038/s41467-020-18972-x

    The structural variation landscape in 492 Atlantic salmon genomes bioRxiv, 2020. Bertolotti, A.C., Layer, R.M., Gundappa, M.K., Gallagher, M.D., Pehlivanoglu, E., Nome, T., Robledo, D., Kent, M.P., Røsæg, L.L., Holen, M.M., Mulugeta, T.D., Ashton, T.J., Hindar, K., Sægrov, H., Florø-Larsen, B., Erkinaro, J., Primmer, C.R., Bernatchez, L., Martin, S.A.M., Johnston, I.A., Sandve, S.R., Lien, S., Macqueen, D.J.. DOI 10.1101/2020.05.16.099614

    Thermal adaptation rather than demographic history drives genetic structure inferred by copy number variants in a marine fish bioRxiv, 2020. Cayuela, H., Dorant, Y., Mérot, C., Laporte, M., Normandeau, E., Gagnon-Harvey, S., Sirois, P., Bernatchez, L.. DOI 10.1101/2020.04.05.026443

    Impacts of stocking and its intensity on effective population size in Brook Charr (Salvelinus fontinalis) populations Conservation Genetics, 2019/08. Philippine Gossieaux, Louis Bernatchez, Pascal Sirois, Dany Garant. DOI 10.1007/s10592-019-01168-2

    Seascape genomics of eastern oyster (Crassostrea virginica) along the Atlantic coast of Canada Evolutionary Applications, 2019/03. Simon Bernatchez, Amanda Xuereb, Martin Laporte, Laura Benestan, Royce Steeves, Mark Laflamme, Louis Bernatchez, Martin A. Mallet. DOI 10.1111/eva.12741

    Domestication and Temperature Modulate Gene Expression Signatures and Growth in the Australasian Snapper Chrysophrys auratus G3&#58; Genes|Genomes|Genetics, 2019/01. Maren Wellenreuther, Jérémy Le Luyer, Denham Cook, Peter A. Ritchie, Louis Bernatchez. DOI 10.1534/g3.118.200647

    Aquatic Landscape Genomics and Environmental Effects on Genetic Variation Trends in Ecology and Evolution, 2019. Grummer, J.A., Beheregaray, L.B., Bernatchez, L., Hand, B.K., Luikart, G., Narum, S.R., Taylor, E.B.. DOI 10.1016/j.tree.2019.02.013

    Chromosomal fusion and life history-associated genomic variation contribute to within-river local adaptation of Atlantic salmon Molecular Ecology, 2019. Wellband, K., Mérot, C., Linnansaari, T., Elliott, J.A.K., Curry, R.A., Bernatchez, L.. DOI 10.1111/mec.14965

    Evidence for host effect on the intestinal microbiota of whitefish (Coregonus sp.) species pairs and their hybrids Ecology and Evolution, 2019. Sevellec, M., Laporte, M., Bernatchez, A., Derome, N., Bernatchez, L.. DOI 10.1002/ece3.5676

    Model-based demographic inference of introgression history in European whitefish species pairs' Journal of Evolutionary Biology, 2019. Rougeux, C., Gagnaire, P.-A., Bernatchez, L.. DOI 10.1111/jeb.13482

    Polygenic selection drives the evolution of convergent transcriptomic landscapes across continents within a Nearctic sister species complex Molecular Ecology, 2019. Rougeux, C., Gagnaire, P.-A., Praebel, K., Seehausen, O., Bernatchez, L.. DOI 10.1111/mec.15226

    Standing genetic variation and chromosomal rearrangements facilitate local adaptation in a marine fish bioRxiv, 2019. Cayuela, H., Rougemont, Q., Laporte, M., Mérot, C., Normandeau, E., Dorant, Y., Tørresen, O.K., Hoff, S.N.K., Jentoft, S., Sirois, P., Castonguay, M., Jansen, T., Praebel, K., Clément, M., Bernatchez, L.. DOI 10.1101/782201

    Sex-specific co-expression networks and sex-biased gene expression in the salmonid Brook Charr Salvelinus fontinalis 2018/04/21. Ben J. G. Sutherland, Jenni M. Prokkola, Céline Audet, Louis Bernatchez. DOI 10.1101/305680

    Assessing the efficiency of eDNA metabarcoding for documenting patterns of metazoan communities in the Arctic. 2018/03/29. Noémie Leduc, Louis Bernatchez, Philippe Archambault, Kimberly Howland, Antoine Dispas, Gesche Winkler, Anaïs Lacoursière Roussel. DOI 10.7287/peerj.preprints.26798

    EDNA metabarcoding as a new surveillance approach for coastal Arctic biodiversity International Journal of Business Innovation and Research, 2018. Lacoursière-Roussel, A., Howland, K., Normandeau, E., Grey, E.K., Archambault, P., Deiner, K., Lodge, D.M., Hernandez, C., Leduc, N., Bernatchez, L.. DOI 10.1002/ece3.4213

    Eco-Evolutionary Genomics of Chromosomal Inversions Trends in Ecology and Evolution, 2018. Wellenreuther, M., Bernatchez, L.. DOI 10.1016/j.tree.2018.04.002

    Genetic and morphological support for possible sympatric origin of fish from subterranean habitats Scientific Reports, 2018. Hashemzadeh Segherloo, I., Normandeau, E., Benestan, L., Rougeux, C., Coté, G., Moore, J.-S., Ghaedrahmati, N., Abdoli, A., Bernatchez, L.. DOI 10.1038/s41598-018-20666-w

    Intercontinental karyotype-environment parallelism supports a role for a chromosomal inversion in local adaptation in a seaweed fly Proceedings of the Royal Society B: Biological Sciences, 2018. Mérot, C., Berdan, E.L., Babin, C., Normandeau, E., Wellenreuther, M., Bernatchez, L.. DOI 10.1098/rspb.2018.0519

    Intestinal microbiota of whitefish (Coregonus sp.) species pairs and their hybrids in natural and controlled environment. bioRxiv, 2018. Sevellec, M., Laporte, M., Bernatchez, A., Derome, N., Bernatchez, L.. DOI 10.1101/312231

    Karyotype-environment associations support a role for a chromosomal inversion in local adaptation in the seaweed fly Coelopa frigida bioRxiv, 2018. Mérot, C., Berdan, E., Babin, C., Normandeau, E., Wellenreuther, M., Bernatchez, L.. DOI 10.1101/278317

    Linking genetic and ecological differentiation in an ungulate with a circumpolar distribution Ecography, 2018. Yannic, G., Ortego, J., Pellissier, L., Lecomte, N., Bernatchez, L., Côté, S.D.. DOI 10.1111/ecog.02995

    On the roles of landscape heterogeneity and environmental variation in determining population genomic structure in a dendritic system Molecular Ecology, 2018. Brauer, C.J., Unmack, P.J., Smith, S., Bernatchez, L., Beheregaray, L.B.. DOI 10.1111/mec.14808

    Ongoing niche differentiation under high gene flow in a polymorphic brackish water threespine stickleback (Gasterosteus aculeatus) population BMC Evolutionary Biology, 2018. Østbye, K., Taugbøl, A., Ravinet, M., Harrod, C., Pettersen, R.A., Bernatchez, L., Vøllestad, L.A.. DOI 10.1186/s12862-018-1128-y

    River-Specific Gene Expression Patterns Associated with Habitat Selection for Key Hormone-Coding Genes in Glass Eel-Stage American Eels Transactions of the American Fisheries Society, 2018. Gaillard, M., Pavey, S.A., Bernatchez, L., Audet, C.. DOI 10.1002/tafs.10065

    Synergistic Integration of Genomics and Ecoevolutionary Dynamics for Sustainable Fisheries: A Reply to Kuparinen and Uusi-Heikkilä Trends in Ecology and Evolution, 2018. Bernatchez, L., Wellenreuther, M.. DOI 10.1016/j.tree.2017.12.005

    Temporal variations in kidney metal concentrations and their implications for retinoid metabolism and oxidative stress response in wild yellow perch (Perca flavescens) Aquatic Toxicology, 2018. Defo, M.A., Bernatchez, L., Campbell, P.G.C., Couture, P.. DOI 10.1016/j.aquatox.2018.06.007


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