Répertoire du corps professoral
Louis Bernatchez
Professeur titulaire
(418) 656-2131, poste 403402
Louis.Bernatchez@bio.ulaval.ca
Pavillon Charles-Eugène-Marchand
1030, avenue de la Médecine
Local 1145
Infrastructure pour le suivi génomique de la biodiversité des écosytèmes d'eau douce
Programme: Fonds des leaders John-R.-Evans (FLJR)
Organisme(s) subventionnaire(s): Fondation Canadienne pour l'innovation (La), Institut de biologie intégrative et des systèmes, Ministère de l'Économie et de l'Innovation
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 janvier 2023
au 24 mai 2024
iTrackDNA: Non-Destructive Precision Genomics for Environmental Impact Tracking in a Global Climate Change Era
Programme: Projets de recherche appliquée à grande échelle - Large-Scale Applied Research Project
Organisme(s) subventionnaire(s): Genome British Columbia, Fonds de recherche du Québec - Nature et technologies, Génome Québec, Génome Canada, Ministère des Forêts, de la Faune et des Parcs, Ecofish Research
Type de financement: Subvention
Établissement tête: University of Victoria
Du 1 octobre 2021
au 30 septembre 2025
Genovalia - Phase 1
Programme: Programme d’intégration de la génomique
Organisme(s) subventionnaire(s): Université Laval - Fonds internes, Génome Québec
Type de financement: Subvention
Établissement tête: Université Laval
Du 31 mars 2021
au 31 mars 2024
Déterminismes moléculaires et sélectifs du maintien du potentiel adaptatif dans un écosystème aquatique hétérogène.
Programme: Subventions à la découverte SD (individuelles et d'équipe)
Organisme(s) subventionnaire(s): Conseil de recherches en sciences naturelles et génie Canada, Secrétariat Inter-Conseils (Canada) (CRSH, CRSNG, IRSC)
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 avril 2020
au 31 mars 2025
Développement et application de protocoles innovants d'ensemencement et de suivi pour la restauration des populations du saumon atlantique
Programme: Subventions de recherche et développement coopérative (RDC)
Organisme(s) subventionnaire(s): Société saumon de la rivière Romaine, Conseil de recherches en sciences naturelles et génie Canada, Ministère des Forêts, de la Faune et des Parcs, Hydro-Québec
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 mars 2020
au 28 février 2025
FISHES : Fostering Indigenous Small-scale fisheries for Health, Economy, and food Security
Programme: Projets de recherche appliquée à grande échelle - Large-Scale Applied Research Project
Organisme(s) subventionnaire(s): Gouvernement du Nunavut, MITACS Inc., Grand Conseil des Cris du Québec (Grand Council of the Crees), Ministère de l'Économie et de l'Innovation, Niskamoon Corporation, Génome Canada, Fonds de recherche du Québec - Nature et technologies, Génome Québec, Université Concordia, Ministry of Economic development, Job Creation and Trade, Eeyou Marine Region Wildlife Board, Université de Carleton
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 octobre 2019
au 31 mars 2025
FISHES Activité 6 Project management
Programme: Projets de recherche appliquée à grande échelle - Large-Scale Applied Research Project
Organisme(s) subventionnaire(s): Génome Québec
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 septembre 2019
au 31 mars 2025
FISHES Transferts externes
Programme: Projets de recherche appliquée à grande échelle - Large-Scale Applied Research Project
Organisme(s) subventionnaire(s): Génome Québec
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 septembre 2019
au 31 mars 2025
FISHES Activités 1-4 Genomic research
Programme: Projets de recherche appliquée à grande échelle - Large-Scale Applied Research Project
Organisme(s) subventionnaire(s): Génome Québec
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 septembre 2019
au 31 mars 2025
FISHES Activité 5 GE3LS
Programme: Projets de recherche appliquée à grande échelle - Large-Scale Applied Research Project
Organisme(s) subventionnaire(s): Génome Québec
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 septembre 2019
au 31 mars 2025
Ressources Aquatiques Québec
Programme: Regroupements stratégiques NT
Organisme(s) subventionnaire(s): Université Laval - Fonds internes, Fonds de recherche du Québec - Nature et technologies
Type de financement: Subvention
Établissement tête: Université du Québec à Rimouski - UQAR
Du 1 avril 2019
au 31 mars 2026
Genomics for developing the first Canadian production ready strain of selectively bred Eastern Oyster
Programme: Programme de partenariats pour les applications de la génomique (PPAG)
Organisme(s) subventionnaire(s): Génome Québec, Génome Canada
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 avril 2019
au 31 décembre 2024
Production d'omble de fontaine adaptée aux changements climatiques: évaluation de l'importance des effets épigénétiques
Programme: Subvention de partenariat stratégique (SPS)
Organisme(s) subventionnaire(s): Secrétariat Inter-Conseils (Canada) (CRSH, CRSNG, IRSC), Fonds de recherche du Québec - Nature et technologies, Ouranos, Conseil de recherches en sciences naturelles et génie Canada, Université du Québec à Rimouski
Type de financement: Subvention
Établissement tête: Université Laval
Du 30 septembre 2018
au 30 septembre 2023
L'ADN environnemental comme nouvel outil de gestion de la faune piscicole au Québec
Programme: Subvention de partenariat stratégique (SPS)
Organisme(s) subventionnaire(s): Ministère des Forêts, de la Faune et des Parcs, Secrétariat Inter-Conseils (Canada) (CRSH, CRSNG, IRSC), Conseil de recherches en sciences naturelles et génie Canada, Société des établissements de plein air du Québec (SÉPAQ), Fonds de recherche du Québec - Nature et technologies
Type de financement: Subvention
Établissement tête: Université Laval
Du 30 septembre 2018
au 29 septembre 2023
Financements des 2 dernières années
Analyse génétique de saumons et ouananiches de la rivière Corneille
Organisme(s) subventionnaire(s): Fédération québécoise pour le saumon de l'atlantique
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 juillet 2020
au 31 décembre 2021
Plateforme d'Analyses Génomiques (PAG-IBIS)
Programme: Appel de projets en appui aux plateformes technologiques stratégiques
Organisme(s) subventionnaire(s): Ministère de l'Économie et de l'Innovation
Type de financement: Subvention
Établissement tête: Université Laval
Du 5 décembre 2019
au 31 mars 2023
Developing Genomic Tools for Improved Oyster Production in Eastern Canada
Programme: Accélération Québec (MITACS et gouvernement provincial)
Organisme(s) subventionnaire(s): MITACS Inc.
Type de financement: Subvention
Établissement tête: Université Laval
Du 15 avril 2019
au 14 avril 2022
American Eel : Utilizing modern techniques to assess conservation status in Texas
Organisme(s) subventionnaire(s): Texas Parks and Wildlife Department
Type de financement: Subvention
Établissement tête: Université Laval
Du 30 novembre 2017
au 31 août 2022
Integrating genomics, phenotypes and local ecological knowledge towards improving capelin stock management in Canadian Atlantic waters
Programme: Subventions de projets stratégiques (SPS)
Organisme(s) subventionnaire(s): Conseil de recherches en sciences naturelles et génie Canada
Type de financement: Subvention
Établissement tête: Université Laval
Du 30 septembre 2016
au 31 mai 2023
LARSEM: Laboratoire aquatique de recherche en sciences environnementales et médicales
Programme: Fonds d'innovation (FI)
Organisme(s) subventionnaire(s): Fondation Canadienne pour l'innovation (La), Université Laval - Fonds internes, Ministère de l'Enseignement supérieur, de la Recherche, de la Science
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 novembre 2015
au 31 décembre 2022
Encadrements terminés dans les 5 dernières années
Publications des 5 dernières années
Widespread deviant patterns of heterozygosity in whole-genome sequencing due to autopolyploidy, repeated elements, and duplication 2023/07/30. Xavier Dallaire, Raphael Bouchard, Philippe Hénault, Gabriela Ulmo-Diaz, Eric Normandeau, Claire Mérot, Louis Bernatchez, Jean-Sébastien Moore. DOI 10.1101/2023.07.27.550877
How eDNA data filtration, sequence coverage, and primer selection influence assessment of fish communities in northern temperate lakes Environmental DNA, 2023/06/27. Erik García‐Machado, Eric Normandeau, Guillaume Côté, Louis Bernatchez. DOI 10.1002/edn3.444
Design and validation of a high-density SNP array for the Eastern oyster (Crassostrea virginica) G3 Genes|Genomes|Genetics, 2023/03/26. Amanda Xuereb, Rodrigo Marín Nahuelpi, Eric Normandeau, Charles Babin, Martin Laporte, André Mallet, José M Yáñez, Martin Mallet, Louis Bernatchez. DOI 10.1093/g3journal/jkad071
Natural hybridization reduces vulnerability to climate change Nature Climate Change, 2023/01/30. Chris J. Brauer, Jonathan Sandoval-Castillo, Katie Gates, Michael P. Hammer, Peter J. Unmack, Louis Bernatchez, Luciano B. Beheregaray. DOI 10.1038/s41558-022-01585-1
Captive rearing effects on the methylome of Atlantic salmon after oceanic migration: sex-specificity and intergenerational stability 2022/10/07. Clare J. Venney, Raphaël Bouchard, Julien April, Eric Normandeau, Laurie Lecomte, Guillaume Côté, Louis Bernatchez. DOI 10.1101/2022.10.03.510655
Relationship between brook charr (Salvelinus fontinalis) eDNA concentration and angling data in structured wildlife areas Environmental DNA, 2022/08/02. Maxime Gaudet‐Boulay, Erik García‐Machado, Martin Laporte, Matthew Yates, Bérénice Bougas, Cécilia Hernandez, Guillaume Côté, Amélie Gilbert, Louis Bernatchez. DOI 10.1002/edn3.341
Thermal regime during parental sexual maturation, but not during offspring rearing, modulates DNA methylation in brook charr ( Salvelinus fontinalis ) Proceedings of the Royal Society B: Biological Sciences, 2022/05/11. Clare J. Venney, Kyle W. Wellband, Eric Normandeau, Carolyne Houle, Dany Garant, Céline Audet, Louis Bernatchez. DOI 10.1098/rspb.2022.0670
Cage transplant experiment shows weak transport effect on relative abundance of fish community composition as revealed by eDNA metabarcoding Ecological Indicators, 2022. Laporte, M., Berger, C.S., García-Machado, E., Côté, G., Morissette, O., Bernatchez, L.. DOI 10.1016/j.ecolind.2022.108785
Fuwen Wei—Recipient of the 2021 Molecular Ecology Prize Molecular Ecology, 2022. Hu, Y., Bernatchez, L.. DOI 10.1111/mec.16306
Linking genetic, morphological, and behavioural divergence between inland island and mainland deer mice Heredity, 2022. Miller, J.M., Garant, D., Perrier, C., Juette, T., Jameson, J.W., Normandeau, E., Bernatchez, L., Réale, D.. DOI 10.1038/s41437-021-00492-z
eDNA metabarcoding as a means to assess distribution of subterranean fish communities: Iranian blind cave fishes as a case study Environmental DNA, 2022. Hashemzadeh Segherloo, I., Tabatabaei, S.N., Abdolahi-Mousavi, E., Hernandez, C., Normandeau, E., Laporte, M., Boyle, B., Amiri, M., GhaedRahmati, N., Hallerman, E., Bernatchez, L.. DOI 10.1002/edn3.264
DNA Transposon Expansion is Associated with Genome Size Increase in Mudminnows Genome Biology and Evolution, 2021/10/01. Robert Lehmann, Aleš Kovařík, Konrad Ocalewicz, Lech Kirtiklis, Andrea Zuccolo, Jesper N Tegner, Josef Wanzenböck, Louis Bernatchez, Dunja K Lamatsch, Radka Symonová. DOI 10.1093/gbe/evab228
Assessing the effects of genotype-by-environment interaction on epigenetic, transcriptomic, and phenotypic response in a Pacific salmon G3 Genes|Genomes|Genetics, 2021/04/12. Kris A Christensen, Jérémy Le Luyer, Michelle T T Chan, Eric B Rondeau, Ben F Koop, Louis Bernatchez, Robert H Devlin. DOI 10.1093/g3journal/jkab021
Comparing CRISPR‐Cas and qPCR eDNA assays for the detection of Atlantic salmon (Salmo salar L.) Environmental DNA, 2021/01. Molly‐Ann Williams, Cecilia Hernandez, Antóin M. O'Sullivan, Julien April, Fiona Regan, Louis Bernatchez, Anne Parle‐McDermott. DOI 10.1002/edn3.174
The future of biodiversity monitoring and conservation utilizing environmental DNA Environmental DNA, 2021/01. Kristy Deiner, Hiroki Yamanaka, Louis Bernatchez. DOI 10.1002/edn3.178
Using environmental DNA for biomonitoring of freshwater fish communities: Comparison with established gillnet surveys in a boreal hydroelectric impoundment Environmental DNA, 2021/01. Damien Boivin‐Delisle, Martin Laporte, Frédéric Burton, René Dion, Eric Normandeau, Louis Bernatchez. DOI 10.1002/edn3.135
Epigenomic modifications induced by hatchery rearing persist in germ line cells of adult salmon after their oceanic migration Evolutionary Applications, 2021. Leitwein, M., Laporte, M., Le Luyer, J., Mohns, K., Normandeau, E., Withler, R., Bernatchez, L.. DOI 10.1111/eva.13235
Genome-wide DNA methylation predicts environmentally-driven life history variation in a marine fish bioRxiv, 2021. Cayuela, H., Rougeux, C., Laporte, M., Mérot, C., Normandeau, E., Leitwein, M., Dorant, Y., Præbel, K., Kenchington, E., Clément, M., Sirois, P., Bernatchez, L.. DOI 10.1101/2021.01.28.428603
The rise and fall of the ancient northern pike master sex determining gene eLife, 2021. Pan, Q., Feron, R., Jouanno, E., Darras, H., Herpin, A., Koop, B., Rondeau, E., Goetz, F.W., Larson, W.A., Bernatchez, L., Tringali, M., Curran, S.S., Saillant, E., Denys, G.P.J., von Hippel, F.A., Chen, S., López, J.A., Verreycken, H., Ocalewicz, K., Guyomard, R., Eche, C., Lluch, J., Roques, C., Hu, H., Tabor, R., Dehaan, P., Nichols, K.M., Journot, L., Parrinello, H., Klopp, C., Interesova, E.A., Trifonov, V., Schartl, M., Postlethwait, J., Guiguen, Y.. DOI 10.7554/eLife.62858
Adaptation of plasticity to projected maximum temperatures and across climatically defined bioregions Proceedings of the National Academy of Sciences, 2020/07/21. Jonathan Sandoval-Castillo, Katie Gates, Chris J. Brauer, Steve Smith, Louis Bernatchez, Luciano B. Beheregaray. DOI 10.1073/pnas.1921124117
60 specific eDNA qPCR assays to detect invasive, threatened, and exploited freshwater vertebrates and invertebrates in Eastern Canada Environmental DNA, 2020/07. Cecilia Hernandez, Bérénice Bougas, Alysse Perreault‐Payette, Anouk Simard, Guillaume Côté, Louis Bernatchez. DOI 10.1002/edn3.89
The rise and fall of the ancient northern pike master sex determining gene 2020/06/01. Qiaowei Pan, Romain Feron, Elodie Jouanno, Hugo Darras, Amaury Herpin, Ben Koop, Eric Rondeau, Frederick W. Goetz, Wesley A. Larson, Louis Bernatchez, Mike Tringali, Stephen S. Curran, Eric Saillant, Gael P.J. Denys, Frank A. von Hippel, Songlin Chen, J. Andrés López, Hugo Verreycken, Konrad Ocalewicz, Rene Guyomard, Camille Eche, Jerome Lluch, Celine Roques, Hongxia Hu, Roger Tabor, Patrick DeHaan, Krista M. Nichols, Laurent Journot, Hugues Parrinello, Christophe Klopp, Elena A. Interesova, Vladimir Trifonov, Manfred Schartl, John Postlethwait, Yann Guiguen. DOI 10.1101/2020.05.31.125336
Population structure and genomic evidence for local adaptation to freshwater and marine environments in anadromous Arctic Char (Salvelinus alpinus) throughout Nunavik, Québec, Canada 2020/04/29. Xavier Dallaire, Éric Normandeau, Julien Mainguy, Jean-Éric Tremblay, Louis Bernatchez, Jean-Sébastien Moore. DOI 10.1101/2020.04.29.066449
Contrasted gene decay in subterranean vertebrates: Insights from cavefishes and fossorial mammals bioRxiv, 2020. Policarpo, M., Fumey, J., Lafargeas, P., Naquin, D., Thermes, C., Naville, M., Dechaud, C., Volff, J.-N., Cabau, C., Klopp, C., Møller, P.R., Bernatchez, L., García-Machado, E., Rétaux, S., Casane, D.. DOI 10.1101/2020.03.05.978213
Copy number variants outperform SNPs to reveal genotype-temperature association in a marine species bioRxiv, 2020. Dorant, Y., Cayuela, H., Wellband, K., Laporte, M., Rougemont, Q., Mérot, C., Normandeau, E., Rochette, R., Bernatchez, L.. DOI 10.1101/2020.01.28.923490
Evolution and genetics of bighead and silver carps: Native population conservation versus invasive species control Evolutionary Applications, 2020. Lu, G., Wang, C., Zhao, J., Liao, X., Wang, J., Luo, M., Zhu, L., Bernatzhez, L., Li, S.. DOI 10.1111/eva.12982
Sexing a Monomorphic Plumage Seabird Using Morphometrics and Assortative Mating Waterbirds, 2020. Seyer, Y., Gauthier, G., Bernatchez, L., Therrien, J.-F.. DOI 10.1675/063.042.0403
Using Haplotype Information for Conservation Genomics Trends in Ecology and Evolution, 2020. Leitwein, M., Duranton, M., Rougemont, Q., Gagnaire, P.-A., Bernatchez, L.. DOI 10.1016/j.tree.2019.10.012
The role of recombination on genome‐wide patterns of local ancestry exemplified by supplemented brook charr populations Molecular Ecology, 2019/11. Maeva Leitwein, Hugo Cayuela, Anne‐Laure Ferchaud, Éric Normandeau, Pierre‐Alexandre Gagnaire, Louis Bernatchez. DOI 10.1111/mec.15256
Adaptive and maladaptive genetic diversity in small populations; Insights from the Brook Charr (Salvelinus fontinalis) case study bioRxiv, 2019. Ferchaud, A.-L., Leitwein, M., Laporte, M., Boivin-Delisle, D., Bougas, B., Hernandez, C., Normandeau, É., Thibault, I., Bernatchez, L.. DOI 10.1101/660621
Author Correction: Effects of sampling effort on biodiversity patterns estimated from environmental DNA metabarcoding surveys (Scientific Reports, (2018), 8, 1, (8843), 10.1038/s41598-018-27048-2) Scientific Reports, 2019. Grey, E.K., Bernatchez, L., Cassey, P., Deiner, K., Deveney, M., Howland, K.L., Lacoursière-Roussel, A., Leong, S.C.Y., Li, Y., Olds, B., Pfrender, M.E., Prowse, T.A.A., Renshaw, M.A., Lodge, D.M.. DOI 10.1038/s41598-019-43804-4
Balancing selection via life-history trade-offs maintains an inversion polymorphism in a seaweed fly bioRxiv, 2019. Mérot, C., Llaurens, V., Normandeau, E., Bernatchez, L., Wellenreuther, M.. DOI 10.1101/648584
Comparing Pool-seq, Rapture, and GBS genotyping for inferring weak population structure: The American lobster (Homarus americanus) as a case study Ecology and Evolution, 2019. Dorant, Y., Benestan, L., Rougemont, Q., Normandeau, E., Boyle, B., Rochette, R., Bernatchez, L.. DOI 10.1002/ece3.5240
Comparing genomic signatures of domestication in two Atlantic salmon (Salmo salar L.) populations with different geographical origins Evolutionary Applications, 2019. López, M.E., Benestan, L., Moore, J.-S., Perrier, C., Gilbey, J., Di Genova, A., Maass, A., Diaz, D., Lhorente, J.-P., Correa, K., Neira, R., Bernatchez, L., Yáñez, J.M.. DOI 10.1111/eva.12689
Demographic history, linked selection, and recombination shape the genomic landscape of a broadly distributed Pacific salmon bioRxiv, 2019. Rougemont, Q., Moore, J.-S., Leroy, T., Normandeau, E., Rondeau, E.B., Withler, R.E., Van Doornik, D.M., Crane, P.A., Naish, K.A., Garza, J.C., Beacham, T.D., Koop, B.F., Bernatchez, L.. DOI 10.1101/732750
Going beyond SNPs: The role of structural genomic variants in adaptive evolution and species diversification Molecular Ecology, 2019. Wellenreuther, M., Mérot, C., Berdan, E., Bernatchez, L.. DOI 10.1111/mec.15066
Sex-specific co-expression networks and sex-biased gene expression in the salmonid Brook Charr Salvelinus fontinalis G3: Genes, Genomes, Genetics, 2019. Sutherland, B.J.G., Prokkola, J.M., Audet, C., Bernatchez, L.. DOI 10.1534/g3.118.200910
Welcome to Environmental DNA! Environmental DNA, 2019. Bernatchez, L.. DOI 10.1002/edn3.18
Putatively adaptive genetic variation in the giant California sea cucumber (Parastichopus californicus) as revealed by environmental association analysis of restriction‐site associated DNA sequencing data Molecular Ecology, 2018/12. Amanda Xuereb, Christopher M. Kimber, Janelle M. R. Curtis, Louis Bernatchez, Marie‐Josée Fortin. DOI 10.1111/mec.14942
Domestication and Temperature Modulate Gene Expression Signatures and Growth in the Australasian Snapper Chrysophrys Auratus 2018/08/07. Maren Wellenreuther, Jérémy Le Luyer, Denham Cook, Peter A. Ritchie, Louis Bernatchez. DOI 10.1101/387084
Polygenic selection drives the evolution of convergent transcriptomic landscapes across continents within a Nearctic sister-species complex 2018/04/30. Clément Rougeux, Pierre-Alexandre Gagnaire, Kim Praebel, Ole Seehausen, Louis Bernatchez. DOI 10.1101/311464
A climate-associated multispecies cryptic cline in the northwest Atlantic Science Advances, 2018/03/02. Ryan R. E. Stanley, Claudio DiBacco, Ben Lowen, Robert G. Beiko, Nick W. Jeffery, Mallory Van Wyngaarden, Paul Bentzen, David Brickman, Laura Benestan, Louis Bernatchez, Catherine Johnson, Paul V. R. Snelgrove, Zeliang Wang, Brendan F. Wringe, Ian R. Bradbury. DOI 10.1126/sciadv.aaq0929
Asymmetric oceanographic processes mediate connectivity and population genetic structure, as revealed by RADseq, in a highly dispersive marine invertebrate (Parastichopus californicus) Molecular Ecology, 2018. Xuereb, A., Benestan, L., Normandeau, É., Daigle, R.M., Curtis, J.M.R., Bernatchez, L., Fortin, M.-J.. DOI 10.1111/mec.14589
Combining population genomics and forward simulations to investigate stocking impacts: A case study of Muskellunge (Esox masquinongy) from the St. Lawrence River basin bioRxiv, 2018. Rougemont, Q., Carrier, A., Leluyer, J., Ferchaud, A.-L., Farrell, J.M., Hatin, D., Brodeur, P., Bernatchez, L.. DOI 10.1101/363283
Demographic and genetic approaches to study dispersal in wild animal populations: A methodological review Molecular Ecology, 2018. Cayuela, H., Rougemont, Q., Prunier, J.G., Moore, J.-S., Clobert, J., Besnard, A., Bernatchez, L.. DOI 10.1111/mec.14848
Effects of sampling effort on biodiversity patterns estimated from environmental DNA metabarcoding surveys Scientific Reports, 2018. Grey, E.K., Bernatchez, L., Cassey, P., Deiner, K., Deveney, M., Howland, K.L., Lacoursière-Roussel, A., Leong, S.C.Y., Li, Y., Olds, B., Pfrender, M.E., Prowse, T.A.A., Renshaw, M.A., Lodge, D.M.. DOI 10.1038/s41598-018-27048-2
Holobionts and ecological speciation: the intestinal microbiota of lake whitefish species pairs Microbiome, 2018. Sevellec, M., Derome, N., Bernatchez, L.. DOI 10.1186/s40168-018-0427-2
Next-generation conservation genetics and biodiversity monitoring Evolutionary Applications, 2018. Hunter, M.E., Hoban, S.M., Bruford, M.W., Segelbacher, G., Bernatchez, L.. DOI 10.1111/eva.12661
Optimising the detection of marine taxonomic richness using environmental DNA metabarcoding: The effects of filter material, pore size and extraction method Metabarcoding and Metagenomics, 2018. Deiner, K., Lopez, J., Bourne, S., Holman, L.E., Seymour, M., Grey, E.K., Lacoursière-Roussel, A., Li, Y., Renshaw, M.A., Pfrender, M.E., Rius, M., Bernatchez, L., Lodge, D.M.. DOI 10.3897/mbmg.2.28963
Predicting the genetic impact of stocking in Brook Charr (Salvelinus fontinalis) by combining RAD sequencing and modeling of explanatory variables Evolutionary Applications, 2018. Létourneau, J., Ferchaud, A.-L., Le Luyer, J., Laporte, M., Garant, D., Bernatchez, L.. DOI 10.1111/eva.12566
The lobster node of the CFRN: Co-constructed and collaborative research on productivity, stock structure, and connectivity in the American Lobster (Homarus americanus) Canadian Journal of Fisheries and Aquatic Sciences, 2018. Rochette, R., Sainte-Marie, B., Allain, M., Baker, J., Bernatchez, L., Boudreau, V., Comeau, M., Côté, J., Miron, G., Ramsay, L., Squires, K., Tremblay, M.J.. DOI 10.1139/cjfas-2016-0426
A qPCR-based method to detect the eel parasitic nematode Anguillicola crassus in intermediate and final hosts Parasitology Research, 2023/06. Chloé Suzanne Berger, Bérénice Bougas, Guillaume Côté, Jean-François Dumont, Louis Bernatchez. DOI 10.1007/s00436-023-07843-1
Distribution of the boreal chorus frog (Pseudacris maculata) in an urban environment using environmental DNA Environmental DNA, 2022/03. Marie‐Pier Dubois‐Gagnon, Louis Bernatchez, Marc Bélisle, Yohann Dubois, Marc J. Mazerolle. DOI 10.1002/edn3.254
Fish community shifts along a strong fluvial environmental gradient revealed by eDNA metabarcoding Environmental DNA, 2022/01. Erik García‐Machado, Martin Laporte, Eric Normandeau, Cecilia Hernández, Guillaume Côté, Yves Paradis, Marc Mingelbier, Louis Bernatchez. DOI 10.1002/edn3.221
A chromosome-anchored genome assembly for Lake Trout (Salvelinus namaycush) Molecular Ecology Resources, 2022. Smith, S.R., Normandeau, E., Djambazian, H., Nawarathna, P.M., Berube, P., Muir, A.M., Ragoussis, J., Penney, C.M., Scribner, K.T., Luikart, G., Wilson, C.C., Bernatchez, L.. DOI 10.1111/1755-0998.13483
A melting pot in the Arctic: Analysis of mitogenome variation in Arctic char (Salvelinus alpinus) reveals a 1000-km contact zone between highly divergent lineages Ecology of Freshwater Fish, 2022. Jacobsen, M.W., Jensen, N.W., Nygaard, R., Præbel, K., Jónsson, B., Nielsen, N.H., Pujolar, J.M., Fraser, D.J., Bernatchez, L., Hansen, M.M.. DOI 10.1111/eff.12633
Chromosome-level assembly reveals a putative Y-autosomal fusion in the sex determination system of the Greenland Halibut (Reinhardtius hippoglossoides) G3: Genes, Genomes, Genetics, 2022. Ferchaud, A.-L., Mérot, C., Normandeau, E., Ragoussis, J., Babin, C., Djambazian, H., Bérubé, P., Audet, C., Treble, M., Walkusz, W., Bernatchez, L.. DOI 10.1093/G3JOURNAL/JKAB376
Genome assembly, structural variants, and genetic differentiation between Lake Whitefish young species pairs (Coregonus sp.) with long and short reads bioRxiv, 2022. Mérot, C., Stenløkk, K.S.R., Venney, C., Laporte, M., Moser, M., Normandeau, E., Árnyasi, M., Kent, M., Rougeux, C., Flynn, J.M., Lien, S., Bernatchez, L.. DOI 10.1101/2022.01.15.476463
Transgenerational plasticity of dispersal-related traits in a ciliate: genotype-dependency and fitness consequences Oikos, 2022. Cayuela, H., Jacob, S., Schtickzelle, N., Verdonck, R., Philippe, H., Laporte, M., Huet, M., Bernatchez, L., Legrand, D.. DOI 10.1111/oik.08846
Environment-driven reprogramming of gamete DNA methylation occurs during maturation and is transmitted intergenerationally in Atlantic Salmon G3 Genes|Genomes|Genetics, 2021/12/08. Kyle Wellband, David Roth, Tommi Linnansaari, R Allen Curry, Louis Bernatchez. DOI 10.1093/g3journal/jkab353
Environmental DNA as a detection and quantitative tool for stream‐dwelling salamanders: A comparison with the traditional active search method Environmental DNA, 2021/11. Félix Plante, Patrice Bourgault, Yohann Dubois, Louis Bernatchez. DOI 10.1002/edn3.233
Benchmarking bioinformatic tools for fast and accurate eDNA metabarcoding species identification Molecular Ecology Resources, 2021/10. Laetitia Mathon, Alice Valentini, Pierre‐Edouard Guérin, Eric Normandeau, Cyril Noel, Clément Lionnet, Emilie Boulanger, Wilfried Thuiller, Louis Bernatchez, David Mouillot, Tony Dejean, Stéphanie Manel. DOI 10.1111/1755-0998.13430
Incorporating putatively neutral and adaptive genomic data into marine conservation planning Conservation Biology, 2021/06. Amanda Xuereb, Cassidy C. D'Aloia, Marco Andrello, Louis Bernatchez, Marie‐Josée Fortin. DOI 10.1111/cobi.13609
Uncovering endemism in a lake of invasive species introgression Molecular Ecology, 2021/02. Iva Popovic, Louis Bernatchez. DOI 10.1111/mec.15801
Comparing environmental metabarcoding and trawling survey of demersal fish communities in the Gulf of St. Lawrence, Canada Environmental DNA, 2021/01. Seyedeh Fatemeh Afzali, Hugo Bourdages, Martin Laporte, Claire Mérot, Eric Normandeau, Céline Audet, Louis Bernatchez. DOI 10.1002/edn3.111
A compendium of novel genomics technologies provides a chromosome-scale assembly and insights into the sex determining system of the Greenland Halibut bioRxiv, 2021. Ferchaud, A.-L., Mérot, C., Normandeau, E., Ragoussis, I., Babin, C., Djambazian, H., Bérubé, P., Audet, C., Treble, M., Walkusz, W., Bernatchez, L.. DOI 10.1101/2021.06.18.449053
A genomic perspective on an old question: Salmo trouts or Salmo trutta (Teleostei: Salmonidae)? Molecular Phylogenetics and Evolution, 2021. Hashemzadeh Segherloo, I., Freyhof, J., Berrebi, P., Ferchaud, A.-L., Geiger, M., Laroche, J., Levin, B.A., Normandeau, E., Bernatchez, L.. DOI 10.1016/j.ympev.2021.107204
Contrasting Gene Decay in Subterranean Vertebrates: Insights from Cavefishes and Fossorial Mammals Molecular Biology and Evolution, 2021. Policarpo, M., Fumey, J., Lafargeas, P., Naquin, D., Thermes, C., Naville, M., Dechaud, C., Volff, J.-N., Cabau, C., Klopp, C., Møller, P.R., Bernatchez, L., García-Machado, E., Rétaux, S., Casane, D.. DOI 10.1093/molbev/msaa249
Correction to: Genetic differentiation in the mountainous star coral Orbicella faveolata around Cuba (Coral Reefs, (2018), 37, 4, (1217-1227), 10.1007/s00338-018-1722-x) Coral Reefs, 2021. Ulmo-Díaz, G., Casane, D., Bernatchez, L., González-Díaz, P., Apprill, A., Castellanos-Gell, J., Hernández-Fernández, L., García-Machado, E.. DOI 10.1007/s00338-021-02084-z
Long distance migration is a major factor driving local adaptation at continental scale in Coho salmon bioRxiv, 2021. Rougemont, Q., Xuereb, A., Dallaire, X., Moore, J.-S., Normandeau, E., Rondeau, E.B., Withler, R.E., van Doornik, D.M., Crane, P.A., Naish, K.A., Garza, J.C., Beacham, T.D., Koop, B.F., Bernatchez, L.. DOI 10.1101/2021.11.22.469546
Low effective population size in the genetically bottlenecked Australian sea lion is insufficient to maintain genetic variation Animal Conservation, 2021. Bilgmann, K., Armansin, N., Ferchaud, A.L., Normandeau, E., Bernatchez, L., Harcourt, R., Ahonen, H., Lowther, A., Goldsworthy, S.D., Stow, A.. DOI 10.1111/acv.12688
Population genomics of the southern Caspian Sea Vobla Rutilus lacustris Hydrobiologia, 2021. Hashemzadeh Segherloo, I., Ghojoghi, F., Tabatabaei, S.N., Normandeau, E., Hernandez, C., Hallerman, E., Boyle, B., Bernatchez, L.. DOI 10.1007/s10750-020-04442-4
Thermal adaptation rather than demographic history drives genetic structure inferred by copy number variants in a marine fish Molecular Ecology, 2021. Cayuela, H., Dorant, Y., Mérot, C., Laporte, M., Normandeau, E., Gagnon-Harvey, S., Clément, M., Sirois, P., Bernatchez, L.. DOI 10.1111/mec.15835
Copy number variants outperform SNPs to reveal genotype–temperature association in a marine species Molecular Ecology, 2020/12. Yann Dorant, Hugo Cayuela, Kyle Wellband, Martin Laporte, Quentin Rougemont, Claire Mérot, Eric Normandeau, Rémy Rochette, Louis Bernatchez. DOI 10.1111/mec.15565
Environment-driven reprogramming of gamete DNA methylation occurs during maturation and is transmitted intergenerationally in salmon 2020/11/26. Kyle Wellband, David Roth, Tommi Linnansaari, R. Allen Curry, Louis Bernatchez. DOI 10.1101/2020.11.25.396069
Groundtruthing of pelagic forage fish detected by hydroacoustics in a whale feeding area using environmental DNA Environmental DNA, 2020/10. Chloé Suzanne Berger, Bérénice Bougas, Samuel Turgeon, Sophia Ferchiou, Nadia Ménard, Louis Bernatchez. DOI 10.1002/edn3.73
Caged fish experiment and hydrodynamic bidimensional modeling highlight the importance to consider 2D dispersion in fluvial environmental DNA studies Environmental DNA, 2020/07. Martin Laporte, Bérénice Bougas, Guillaume Côté, Olivier Champoux, Yves Paradis, Jean Morin, Louis Bernatchez. DOI 10.1002/edn3.88
Pathway to Increase Standards and Competency of eDNA Surveys (PISCeS)—Advancing collaboration and standardization efforts in the field of eDNA Environmental DNA, 2020/07. Tzitziki Loeza‐Quintana, Cathryn L. Abbott, Daniel D. Heath, Louis Bernatchez, Robert H. Hanner. DOI 10.1002/edn3.112
Balancing selection via life-history trade-offs maintains an inversion polymorphism in a seaweed fly Nature Communications, 2020/02/03. Claire Mérot, Violaine Llaurens, Eric Normandeau, Louis Bernatchez, Maren Wellenreuther. DOI 10.1038/s41467-020-14479-7
Adaptive and maladaptive genetic diversity in small populations: Insights from the Brook Charr (Salvelinus fontinalis) case study Molecular Ecology, 2020. Ferchaud, A.-L., Leitwein, M., Laporte, M., Boivin-Delisle, D., Bougas, B., Hernandez, C., Normandeau, É., Thibault, I., Bernatchez, L.. DOI 10.1111/mec.15566
Chromosomal rearrangements represent modular cassettes for local adaptation across different geographic scales bioRxiv, 2020. Mérot, C., Berdan, E., Cayuela, H., Djambazian, H., Ferchaud, A.-L., Laporte, M., Normandeau, E., Ragoussis, J., Wellenreuther, M., Bernatchez, L.. DOI 10.1101/2020.12.28.424584
Demographic history shaped geographical patterns of deleterious mutation load in a broadly distributed Pacific Salmon PLoS Genetics, 2020. Rougemont, Q., Moore, J.-S., Leroy, T., Normandeau, E., Rondeau, E.B., Withler, R.E., van Doornik, D.M., Crane, P.A., Naish, K.A., Garza, J.C., Beacham, T.D., Koop, B.F., Bernatchez, L.. DOI 10.1371/JOURNAL.PGEN.1008348
Detecting fine-scale population structure in the age of genomics: a case study of lake sturgeon in the Great Lakes Fisheries Research, 2020. Whitaker, J.M., Price, L.E., Boase, J.C., Bernatchez, L., Welsh, A.B.. DOI 10.1016/j.fishres.2020.105646
Genetic population structure and variation at phenology-related loci in anadromous Arctic char (Salvelinus alpinus) Ecology of Freshwater Fish, 2020. Madsen, R.P.A., Jacobsen, M.W., O'Malley, K.G., Nygaard, R., Præbel, K., Jónsson, B., Pujolar, J.M., Fraser, D.J., Bernatchez, L., Hansen, M.M.. DOI 10.1111/eff.12504
Resolving the genetic paradox of invasions: Preadapted genomes and postintroduction hybridization of bigheaded carps in the Mississippi River Basin Evolutionary Applications, 2020. Wang, J., Gaughan, S., Lamer, J.T., Deng, C., Hu, W., Wachholtz, M., Qin, S., Nie, H., Liao, X., Ling, Q., Li, W., Zhu, L., Bernatchez, L., Wang, C., Lu, G.. DOI 10.1111/eva.12863
Shared ancestral polymorphisms and chromosomal rearrangements as potential drivers of local adaptation in a marine fish Molecular Ecology, 2020. Cayuela, H., Rougemont, Q., Laporte, M., Mérot, C., Normandeau, E., Dorant, Y., Tørresen, O.K., Hoff, S.N.K., Jentoft, S., Sirois, P., Castonguay, M., Jansen, T., Praebel, K., Clément, M., Bernatchez, L.. DOI 10.1111/mec.15499
DNA methylation reprogramming, TE derepression, and postzygotic isolation of nascent animal species Science Advances, 2019/10/04. M. Laporte, J. Le Luyer, C. Rougeux, A.-M. Dion-Côté, M. Krick, L. Bernatchez. DOI 10.1126/sciadv.aaw1644
The role of recombination on genome-wide patterns of local ancestry exemplified by supplemented Brook Charr populations 2019/07/15. Maeva Leitwein, Hugo Cayuela, Anne-Laure Ferchaud, Éric Normandeau, Pierre-Alexandre Gagnaire, Louis Bernatchez. DOI 10.1101/702696
Adaptation of plasticity to predicted climates in Australian rainbowfishes (Melanotaenia) across climatically defined bioregions bioRxiv, 2019. Sandoval-Castillo, J., Gates, K., Brauer, C.J., Smith, S., Bernatchez, L., Beheregaray, L.B.. DOI 10.1101/859769
Combining population genomics and forward simulations to investigate stocking impacts: A case study of Muskellunge (Esox masquinongy) from the St. Lawrence River basin Evolutionary Applications, 2019. Rougemont, Q., Carrier, A., Le Luyer, J., Ferchaud, A.-L., Farrell, J.M., Hatin, D., Brodeur, P., Bernatchez, L.. DOI 10.1111/eva.12765
Comparing eDNA metabarcoding and species collection for documenting Arctic metazoan biodiversity Environmental DNA, 2019. Leduc, N., Lacoursière-Roussel, A., Howland, K.L., Archambault, P., Sevellec, M., Normandeau, E., Dispas, A., Winkler, G., McKindsey, C.W., Simard, N., Bernatchez, L.. DOI 10.1002/edn3.35
Comparison of coded-wire tagging with parentage-based tagging and genetic stock identification in a large-scale coho salmon fisheries application in British Columbia, Canada Evolutionary Applications, 2019. Beacham, T.D., Wallace, C., Jonsen, K., McIntosh, B., Candy, J.R., Willis, D., Lynch, C., Moore, J.-S., Bernatchez, L., Withler, R.E.. DOI 10.1111/eva.12711
The genomic pool of standing structural variation outnumbers single nucleotide polymorphism by threefold in the marine teleost Chrysophrys auratus Molecular Ecology, 2019. Catanach, A., Crowhurst, R., Deng, C., David, C., Bernatchez, L., Wellenreuther, M.. DOI 10.1111/mec.15051
The role of ecotype-environment interactions in intraspecific trophic niche partitioning subsequent to stocking Ecological Applications, 2019. Morissette, O., Sirois, P., Wilson, C.C., Laporte, M., Bernatchez, L.. DOI 10.1002/eap.1857
The role of genomic vs. epigenomic variation in shaping patterns of convergent transcriptomic variation across continents in a young species complex bioRxiv, 2019. Rougeux, C., Laporte, M., Gagnaire, P.-A., Bernatchez, L.. DOI 10.1101/784231
Transgenerational dispersal plasticity and its fitness consequences are under genetic control bioRxiv, 2019. Cayuela, H., Jacob, S., Schtickzelle, N., Verdonck, R., Philippe, H., Laporte, M., Huet, M., Bernatchez, L., Legrand, D.. DOI 10.1101/791210
Chromosomal fusion and life history-associated genomic variation contribute to within-river local adaptation of Atlantic salmon 2018/06/15. Kyle Wellband, Claire Mérot, Tommi Linnansaari, J. A. K. Elliott, R. Allen Curry, Louis Bernatchez. DOI 10.1101/347724
Assessing the efficiency of eDNA metabarcoding for documenting patterns of metazoan communities in the Arctic. 2018/03/29. Noémie Leduc, Louis Bernatchez, Philippe Archambault, Kimberly Howland, Antoine Dispas, Gesche Winkler, Anaïs Lacoursière Roussel. DOI 10.7287/peerj.preprints.26798v1
Do differences in the activities of carbohydrate metabolism enzymes between Lake Whitefish ecotypes match predictions from transcriptomic studies? Comparative Biochemistry and Physiology Part - B: Biochemistry and Molecular Biology, 2018. Dalziel, A.C., Laporte, M., Guderley, H., Bernatchez, L.. DOI 10.1016/j.cbpb.2017.08.001
Genetic differentiation in the mountainous star coral Orbicella faveolata around Cuba Coral Reefs, 2018. Ulmo-Díaz, G., Casane, D., Bernatchez, L., González-Díaz, P., Apprill, A., Castellanos-Gell, J., Hernández-Fernández, L., García-Machado, E.. DOI 10.1007/s00338-018-1722-x
Impact of supplementation on deleterious mutation distribution in an exploited salmonid Evolutionary Applications, 2018. Ferchaud, A.-L., Laporte, M., Perrier, C., Bernatchez, L.. DOI 10.1111/eva.12660
Inferring phylogenetic structure, hybridization and divergence times within Salmoninae (Teleostei: Salmonidae) using RAD-sequencing Molecular Phylogenetics and Evolution, 2018. Lecaudey, L.A., Schliewen, U.K., Osinov, A.G., Taylor, E.B., Bernatchez, L., Weiss, S.J.. DOI 10.1016/j.ympev.2018.02.022
Introgressive hybridization between wild and domestic individuals and its relationship with parasitism in brook charr Salvelinus fontinalis Journal of Fish Biology, 2018. Gossieaux, P., Sirois, P., Bernatchez, L., Garant, D.. DOI 10.1111/jfb.13752
Range-wide regional assignment of Atlantic salmon (Salmo salar) using genome wide single-nucleotide polymorphisms Fisheries Research, 2018. Jeffery, N.W., Wringe, B.F., McBride, M.C., Hamilton, L.C., Stanley, R.R.E., Bernatchez, L., Kent, M., Clément, M., Gilbey, J., Sheehan, T.F., Bentzen, P., Bradbury, I.R.. DOI 10.1016/j.fishres.2018.05.017
Recent advances in conservation and population genomics data analysis Evolutionary Applications, 2018. Hendricks, S., Anderson, E.C., Antao, T., Bernatchez, L., Forester, B.R., Garner, B., Hand, B.K., Hohenlohe, P.A., Kardos, M., Koop, B., Sethuraman, A., Waples, R.S., Luikart, G.. DOI 10.1111/eva.12659
Supplementation stocking of Lake Trout (Salvelinus namaycush) in small boreal lakes: Ecotypes influence on growth and condition PLoS ONE, 2018. Morissette, O., Sirois, P., Lester, N.P., Wilson, C.C., Bernatchez, L.. DOI 10.1371/journal.pone.0200599
The demographic history of Atlantic salmon (Salmo salar) across its distribution range reconstructed from approximate Bayesian computations* Evolution, 2018. Rougemont, Q., Bernatchez, L.. DOI 10.1111/evo.13486
Beyond species detection—leveraging environmental DNA and environmental RNA to push beyond presence/absence applications Environmental DNA, 2023/07/28. M. C. Yates, E. Furlan, B. Thalinger, H. Yamanaka, L. Bernatchez. DOI 10.1002/edn3.459
Searching for intralocus sexual conflicts in the three-spined stickleback (Gasterosteus aculeatus) genome Evolution, 2023/06/29. Florent Sylvestre, Claire Mérot, Eric Normandeau, Louis Bernatchez. DOI 10.1093/evolut/qpad075
Searching for intra-locus sexual conflicts in the three-spined stickleback (Gasterosteus aculeatus) genome 2022/07/05. Florent Sylvestre, Claire Mérot, Eric Normandeau, Louis Bernatchez. DOI 10.1101/2022.07.04.498749
Strong Parallel Differential Gene Expression Induced by Hatchery Rearing Weakly Associated with Methylation Signals in Adult Coho Salmon (O. kisutch) Genome Biology and Evolution, 2022/04/10. Maeva Leitwein, Kyle Wellband, Hugo Cayuela, Jérémy Le Luyer, Kayla Mohns, Ruth Withler, Louis Bernatchez. DOI 10.1093/gbe/evac036
Effect of biotic and abiotic factors on the production and degradation of fish environmental DNA: An experimental evaluation Environmental DNA, 2022/03. Isabeau Caza‐Allard, Martin Laporte, Guillaume Côté, Julien April, Louis Bernatchez. DOI 10.1002/edn3.266
Effects of stocking at the parr stage on the reproductive fitness and genetic diversity of a wild population of Atlantic salmon (Salmo salar L.) Evolutionary Applications, 2022. Bouchard, R., Wellband, K., Lecomte, L., Bernatchez, L., April, J.. DOI 10.1111/eva.13374
Fish out of water: Genomic insights into persistence of rainbowfish populations in the desert Evolution, 2022. Attard, C.R.M., Sandoval-Castillo, J., Brauer, C.J., Unmack, P.J., Schmarr, D., Bernatchez, L., Beheregaray, L.B.. DOI 10.1111/evo.14399
Long-distance migration is a major factor driving local adaptation at continental scale in Coho salmon Molecular Ecology, 2022. Rougemont, Q., Xuereb, A., Dallaire, X., Moore, J.-S., Normandeau, E., Rondeau, E.B., Withler, R.E., Van Doornik, D.M., Crane, P.A., Naish, K.A., Garza, J.C., Beacham, T.D., Koop, B.F., Bernatchez, L.. DOI 10.1111/mec.16339
Thermal regime during parental sexual maturation, but not during offspring rearing, modulates DNA methylation in brook charr (Salvelinus fontinalis) bioRxiv, 2022. Venney, C.J., Wellband, K.W., Normandeau, E., Houle, C., Garant, D., Audet, C., Bernatchez, L.. DOI 10.1101/2022.02.25.481661
Epigenetic inheritance and reproductive mode in plants and animals Trends in Ecology & Evolution, 2021/12. Dafni Anastasiadi, Clare J. Venney, Louis Bernatchez, Maren Wellenreuther. DOI 10.1016/j.tree.2021.08.006
Proper environmental DNA metabarcoding data transformation reveals temporal stability of fish communities in a dendritic river system Environmental DNA, 2021/09. Martin Laporte, Emilie Reny‐Nolin, Victoria Chouinard, Cécilia Hernandez, Eric Normandeau, Bérénice Bougas, Caroline Côté, Sonja Behmel, Louis Bernatchez. DOI 10.1002/edn3.224
A supergene in seaweed flies modulates male traits and female perception 2021/07/01. Swantje Enge, Claire Mérot, Raimondas Mozūraitis, Violeta Apšegaitė, Louis Bernatchez, Gerrit A. Martens, Sandra Radžiutė, Henrik Pavia, Emma L. Berdan. DOI 10.1101/2021.06.30.450538
Genomic data support management of anadromous Arctic Char fisheries in Nunavik by highlighting neutral and putatively adaptive genetic variation Evolutionary Applications, 2021/07. Xavier Dallaire, Éric Normandeau, Julien Mainguy, Jean‐Éric Tremblay, Louis Bernatchez, Jean‐Sébastien Moore. DOI 10.1111/eva.13248
Detecting community change in Arctic marine ecosystems using the temporal dynamics of environmental DNA Environmental DNA, 2021/05. Maelle Sevellec, Anaïs Lacoursière‐Roussel, Louis Bernatchez, Eric Normandeau, Eric Solomon, Andrew Arreak, LeeAnn Fishback, Kimberly Howland. DOI 10.1002/edn3.155
Artificial rearing of atlantic salmon juveniles for supportive breeding programs induces long-term effects on gut microbiota after stocking Microorganisms, 2021. Lavoie, C., Wellband, K., Perreault, A., Bernatchez, L., Derome, N.. DOI 10.3390/microorganisms9091932
Associative overdominance and negative epistasis shape genome-wide ancestry landscape in supplemented fish populations Genes, 2021. Leitwein, M., Cayuela, H., Bernatchez, L.. DOI 10.3390/genes12040524
DNA transposon expansion is associated with genome size increase in mudminnows bioRxiv, 2021. Lehmann, R., Kovařík, A., Ocalewicz, K., Kirtiklis, L., Zuccolo, A., Tegner, J.N., Wanzenböck, J., Bernatchez, L., Lamatsch, D.K., Symonová, R.. DOI 10.1101/2021.06.07.447207
Erratum: Demographic history shaped geographical patterns of deleterious mutation load in a broadly distributed Pacific Salmon (PLoS Genetics (2020) 16:8 (e1008348) DOI: 10.1371/journal.pgen.1008348) PLoS Genetics, 2021. Rougemont, Q., Moore, J.-S., Leroy, T., Normandeau, E., Rondeau, E.B., Withler, R.E., van Doornik, D.M., Crane, P.A., Naish, K.A., Garza, J.C., Beacham, T.D., Koop, B.F., Bernatchez, L.. DOI 10.1371/JOURNAL.PGEN.1009397
Locally Adaptive Inversions Modulate Genetic Variation at Different Geographic Scales in a Seaweed Fly Molecular Biology and Evolution, 2021. Mérot, C., Berdan, E.L., Cayuela, H., Djambazian, H., Ferchaud, A.-L., Laporte, M., Normandeau, E., Ragoussis, J., Wellenreuther, M., Bernatchez, L.. DOI 10.1093/molbev/msab143
Population genomics and history of speciation reveal fishery management gaps in two related redfish species (Sebastes mentella and Sebastes fasciatus) Evolutionary Applications, 2021. Benestan, L.M., Rougemont, Q., Senay, C., Normandeau, E., Parent, E., Rideout, R., Bernatchez, L., Lambert, Y., Audet, C., Parent, G.J.. DOI 10.1111/eva.13143
Fine‐scale environmental heterogeneity shapes fluvial fish communities as revealed by eDNA metabarcoding Environmental DNA, 2020/10. Chloé Suzanne Berger, Cecilia Hernandez, Martin Laporte, Guillaume Côté, Yves Paradis, Dominique W. Kameni T., Eric Normandeau, Louis Bernatchez. DOI 10.1002/edn3.129
Absence of founder effect and evidence for adaptive divergence in a recently introduced insular population of white‐tailed deer (Odocoileus virginianus) Molecular Ecology, 2020/01. Jérémie Fuller, Anne‐Laure Ferchaud, Martin Laporte, Jérémy Le Luyer, Theodore B. Davis, Steeve D. Côté, Louis Bernatchez. DOI 10.1111/mec.15317
Accurate estimation of conservation unit contribution to coho salmon mixed-stock fisheries in British Columbia, Canada, using direct DNA sequencing for single nucleotide polymorphisms Canadian Journal of Fisheries and Aquatic Sciences, 2020. Beacham, T.D., Wallace, C., Jonsen, K., McIntosh, B., Candy, J.R., Rondeau, E.B., Moore, J.-S., Bernatchez, L., Withler, R.E.. DOI 10.1139/cjfas-2019-0339
Deciphering lifelong thermal niche using otolith δ<sup>18</sup>O thermometry within supplemented lake trout (Salvelinus namaycush) populations Freshwater Biology, 2020. Morissette, O., Bernatchez, L., Wiedenbeck, M., Sirois, P.. DOI 10.1111/fwb.13497
Effects of genetic origin on phenotypic divergence in Brook Trout populations stocked with domestic fish Ecosphere, 2020. Gossieaux, P., Lavoie, É., Sirois, P., Thibault, I., Bernatchez, L., Garant, D.. DOI 10.1002/ecs2.3119
Estimating the contribution of Greenland Halibut (Reinhardtius hippoglossoides) stocks to nurseries by means of genotyping-by-sequencing: Sex and time matter Evolutionary Applications, 2020. Carrier, E., Ferchaud, A.-L., Normandeau, E., Sirois, P., Bernatchez, L.. DOI 10.1111/eva.12979
Fine-scale population genetic structure of Endangered Caspian Sea trout, Salmo caspius: implications for conservation Hydrobiologia, 2020. Tabatabaei, S.N., Abdoli, A., Hashemzadeh Segherloo, I., Normandeau, E., Ahmadzadeh, F., Nejat, F., Bernatchez, L.. DOI 10.1007/s10750-020-04334-7
Latitudinal variation in climate-associated genes imperils range edge populations Molecular Ecology, 2020. Smith, S., Brauer, C.J., Sasaki, M., Unmack, P.J., Guillot, G., Laporte, M., Bernatchez, L., Beheregaray, L.B.. DOI 10.1111/mec.15637
Space invaders: Searching for invasive Smallmouth Bass (Micropterus dolomieu) in a renowned Atlantic Salmon (Salmo salar) river Ecology and Evolution, 2020. O'Sullivan, A.M., Samways, K.M., Perreault, A., Hernandez, C., Gautreau, M.D., Curry, R.A., Bernatchez, L.. DOI 10.1002/ece3.6088
Speciation history of European (Anguilla anguilla) and American eel (A. rostrata), analysed using genomic data Molecular Ecology, 2020. Nikolic, N., Liu, S., Jacobsen, M.W., Jónsson, B., Bernatchez, L., Gagnaire, P.-A., Hansen, M.M.. DOI 10.1111/mec.15342
The structural variation landscape in 492 Atlantic salmon genomes Nature Communications, 2020. Bertolotti, A.C., Layer, R.M., Gundappa, M.K., Gallagher, M.D., Pehlivanoglu, E., Nome, T., Robledo, D., Kent, M.P., Røsæg, L.L., Holen, M.M., Mulugeta, T.D., Ashton, T.J., Hindar, K., Sægrov, H., Florø-Larsen, B., Erkinaro, J., Primmer, C.R., Bernatchez, L., Martin, S.A.M., Johnston, I.A., Sandve, S.R., Lien, S., Macqueen, D.J.. DOI 10.1038/s41467-020-18972-x
The structural variation landscape in 492 Atlantic salmon genomes bioRxiv, 2020. Bertolotti, A.C., Layer, R.M., Gundappa, M.K., Gallagher, M.D., Pehlivanoglu, E., Nome, T., Robledo, D., Kent, M.P., Røsæg, L.L., Holen, M.M., Mulugeta, T.D., Ashton, T.J., Hindar, K., Sægrov, H., Florø-Larsen, B., Erkinaro, J., Primmer, C.R., Bernatchez, L., Martin, S.A.M., Johnston, I.A., Sandve, S.R., Lien, S., Macqueen, D.J.. DOI 10.1101/2020.05.16.099614
Thermal adaptation rather than demographic history drives genetic structure inferred by copy number variants in a marine fish bioRxiv, 2020. Cayuela, H., Dorant, Y., Mérot, C., Laporte, M., Normandeau, E., Gagnon-Harvey, S., Sirois, P., Bernatchez, L.. DOI 10.1101/2020.04.05.026443
Impacts of stocking and its intensity on effective population size in Brook Charr (Salvelinus fontinalis) populations Conservation Genetics, 2019/08. Philippine Gossieaux, Louis Bernatchez, Pascal Sirois, Dany Garant. DOI 10.1007/s10592-019-01168-2
Seascape genomics of eastern oyster (Crassostrea virginica) along the Atlantic coast of Canada Evolutionary Applications, 2019/03. Simon Bernatchez, Amanda Xuereb, Martin Laporte, Laura Benestan, Royce Steeves, Mark Laflamme, Louis Bernatchez, Martin A. Mallet. DOI 10.1111/eva.12741
Domestication and Temperature Modulate Gene Expression Signatures and Growth in the Australasian Snapper Chrysophrys auratus G3: Genes|Genomes|Genetics, 2019/01. Maren Wellenreuther, Jérémy Le Luyer, Denham Cook, Peter A. Ritchie, Louis Bernatchez. DOI 10.1534/g3.118.200647
Aquatic Landscape Genomics and Environmental Effects on Genetic Variation Trends in Ecology and Evolution, 2019. Grummer, J.A., Beheregaray, L.B., Bernatchez, L., Hand, B.K., Luikart, G., Narum, S.R., Taylor, E.B.. DOI 10.1016/j.tree.2019.02.013
Chromosomal fusion and life history-associated genomic variation contribute to within-river local adaptation of Atlantic salmon Molecular Ecology, 2019. Wellband, K., Mérot, C., Linnansaari, T., Elliott, J.A.K., Curry, R.A., Bernatchez, L.. DOI 10.1111/mec.14965
Evidence for host effect on the intestinal microbiota of whitefish (Coregonus sp.) species pairs and their hybrids Ecology and Evolution, 2019. Sevellec, M., Laporte, M., Bernatchez, A., Derome, N., Bernatchez, L.. DOI 10.1002/ece3.5676
Model-based demographic inference of introgression history in European whitefish species pairs' Journal of Evolutionary Biology, 2019. Rougeux, C., Gagnaire, P.-A., Bernatchez, L.. DOI 10.1111/jeb.13482
Polygenic selection drives the evolution of convergent transcriptomic landscapes across continents within a Nearctic sister species complex Molecular Ecology, 2019. Rougeux, C., Gagnaire, P.-A., Praebel, K., Seehausen, O., Bernatchez, L.. DOI 10.1111/mec.15226
Standing genetic variation and chromosomal rearrangements facilitate local adaptation in a marine fish bioRxiv, 2019. Cayuela, H., Rougemont, Q., Laporte, M., Mérot, C., Normandeau, E., Dorant, Y., Tørresen, O.K., Hoff, S.N.K., Jentoft, S., Sirois, P., Castonguay, M., Jansen, T., Praebel, K., Clément, M., Bernatchez, L.. DOI 10.1101/782201
Sex-specific co-expression networks and sex-biased gene expression in the salmonid Brook Charr Salvelinus fontinalis 2018/04/21. Ben J. G. Sutherland, Jenni M. Prokkola, Céline Audet, Louis Bernatchez. DOI 10.1101/305680
Assessing the efficiency of eDNA metabarcoding for documenting patterns of metazoan communities in the Arctic. 2018/03/29. Noémie Leduc, Louis Bernatchez, Philippe Archambault, Kimberly Howland, Antoine Dispas, Gesche Winkler, Anaïs Lacoursière Roussel. DOI 10.7287/peerj.preprints.26798
EDNA metabarcoding as a new surveillance approach for coastal Arctic biodiversity International Journal of Business Innovation and Research, 2018. Lacoursière-Roussel, A., Howland, K., Normandeau, E., Grey, E.K., Archambault, P., Deiner, K., Lodge, D.M., Hernandez, C., Leduc, N., Bernatchez, L.. DOI 10.1002/ece3.4213
Eco-Evolutionary Genomics of Chromosomal Inversions Trends in Ecology and Evolution, 2018. Wellenreuther, M., Bernatchez, L.. DOI 10.1016/j.tree.2018.04.002
Genetic and morphological support for possible sympatric origin of fish from subterranean habitats Scientific Reports, 2018. Hashemzadeh Segherloo, I., Normandeau, E., Benestan, L., Rougeux, C., Coté, G., Moore, J.-S., Ghaedrahmati, N., Abdoli, A., Bernatchez, L.. DOI 10.1038/s41598-018-20666-w
Intercontinental karyotype-environment parallelism supports a role for a chromosomal inversion in local adaptation in a seaweed fly Proceedings of the Royal Society B: Biological Sciences, 2018. Mérot, C., Berdan, E.L., Babin, C., Normandeau, E., Wellenreuther, M., Bernatchez, L.. DOI 10.1098/rspb.2018.0519
Intestinal microbiota of whitefish (Coregonus sp.) species pairs and their hybrids in natural and controlled environment. bioRxiv, 2018. Sevellec, M., Laporte, M., Bernatchez, A., Derome, N., Bernatchez, L.. DOI 10.1101/312231
Karyotype-environment associations support a role for a chromosomal inversion in local adaptation in the seaweed fly Coelopa frigida bioRxiv, 2018. Mérot, C., Berdan, E., Babin, C., Normandeau, E., Wellenreuther, M., Bernatchez, L.. DOI 10.1101/278317
Linking genetic and ecological differentiation in an ungulate with a circumpolar distribution Ecography, 2018. Yannic, G., Ortego, J., Pellissier, L., Lecomte, N., Bernatchez, L., Côté, S.D.. DOI 10.1111/ecog.02995
On the roles of landscape heterogeneity and environmental variation in determining population genomic structure in a dendritic system Molecular Ecology, 2018. Brauer, C.J., Unmack, P.J., Smith, S., Bernatchez, L., Beheregaray, L.B.. DOI 10.1111/mec.14808
Ongoing niche differentiation under high gene flow in a polymorphic brackish water threespine stickleback (Gasterosteus aculeatus) population BMC Evolutionary Biology, 2018. Østbye, K., Taugbøl, A., Ravinet, M., Harrod, C., Pettersen, R.A., Bernatchez, L., Vøllestad, L.A.. DOI 10.1186/s12862-018-1128-y
River-Specific Gene Expression Patterns Associated with Habitat Selection for Key Hormone-Coding Genes in Glass Eel-Stage American Eels Transactions of the American Fisheries Society, 2018. Gaillard, M., Pavey, S.A., Bernatchez, L., Audet, C.. DOI 10.1002/tafs.10065
Synergistic Integration of Genomics and Ecoevolutionary Dynamics for Sustainable Fisheries: A Reply to Kuparinen and Uusi-Heikkilä Trends in Ecology and Evolution, 2018. Bernatchez, L., Wellenreuther, M.. DOI 10.1016/j.tree.2017.12.005
Temporal variations in kidney metal concentrations and their implications for retinoid metabolism and oxidative stress response in wild yellow perch (Perca flavescens) Aquatic Toxicology, 2018. Defo, M.A., Bernatchez, L., Campbell, P.G.C., Couture, P.. DOI 10.1016/j.aquatox.2018.06.007
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